Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS20980 and BBR_RS16785 are separated by 95 nucleotidesBBR_RS16785 and BBR_RS16790 are separated by 233 nucleotidesBBR_RS16790 and BBR_RS16795 are separated by 93 nucleotidesBBR_RS16795 and BBR_RS16800 are separated by 40 nucleotides BBR_RS20980: BBR_RS20980 - hypothetical protein, at 1,535,289 to 1,535,562 _RS20980 BBR_RS16785: BBR_RS16785 - thiamine diphosphokinase, at 1,535,658 to 1,536,383 _RS16785 BBR_RS16790: BBR_RS16790 - type I glyceraldehyde-3-phosphate dehydrogenase, at 1,536,617 to 1,537,675 _RS16790 BBR_RS16795: BBR_RS16795 - Cys-tRNA(Pro) deacylase, at 1,537,769 to 1,538,275 _RS16795 BBR_RS16800: BBR_RS16800 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 1,538,316 to 1,539,308 _RS16800
Group Condition BBR_RS20980 BBR_RS16785 BBR_RS16790 BBR_RS16795 BBR_RS16800
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 -5.7 N.D. N.D. +0.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 -4.1 N.D. N.D. -0.4 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3 -3.8 N.D. N.D. -0.7 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day6 -3.7 N.D. N.D. -0.3 N.D.
stress Recovery broth with Cetomacrogol 1000 4.0 mM -3.9 N.D. N.D. +0.1 N.D.
carbon source reconstituted MRS with Difucosyllactose 7.9 mM -4.3 N.D. N.D. +0.7 N.D.
supernatant CDM1Gut with 50% spent media from Escherichia fergusonnii TT2 -2.3 N.D. N.D. -0.8 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day4 -2.6 N.D. N.D. -0.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day4 -3.0 N.D. N.D. +0.4 N.D.
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -2.8 N.D. N.D. +0.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 -2.6 N.D. N.D. +0.3 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day3 -2.5 N.D. N.D. +1.0 N.D.
nutrient dropout CDM1 without Phenylalanine -2.3 N.D. N.D. +1.0 N.D.
stress timecourse MRS + carbenicillin Time7hr +1.3 N.D. N.D. +1.1 N.D.
mrs timecourse MRS Time48hr +1.0 N.D. N.D. +1.5 N.D.
stress Recovery broth with 3-Acetylpyridine 0.04 mM +1.7 N.D. N.D. +1.0 N.D.
stress timecourse MRS + carbenicillin Time9hr +1.7 N.D. N.D. +1.0 N.D.
stress timecourse MRS + carbenicillin Time9hr +1.7 N.D. N.D. +1.1 N.D.
mrs timecourse MRS Time9hr +2.0 N.D. N.D. +1.0 N.D.
stress timecourse MRS + carbenicillin Time3hr +2.0 N.D. N.D. +1.1 N.D.
stress timecourse MRS + kanamycin Time5hr +2.2 N.D. N.D. +0.9 N.D.
mrs timecourse MRS Time8hr +2.2 N.D. N.D. +1.0 N.D.
mrs timecourse MRS Time48hr +1.8 N.D. N.D. +1.5 N.D.
stress timecourse MRS + carbenicillin Time8hr +2.2 N.D. N.D. +1.2 N.D.
stress timecourse MRS + kanamycin Time24hr +2.2 N.D. N.D. +1.3 N.D.
stress timecourse MRS + kanamycin Time9hr +2.1 N.D. N.D. +1.5 N.D.
mrs timecourse MRS Time24hr +2.3 N.D. N.D. +1.4 N.D.
stress timecourse MRS + kanamycin Time8hr +2.6 N.D. N.D. +1.3 N.D.
mrs timecourse MRS Time8hr +2.6 N.D. N.D. +1.4 N.D.
stress timecourse MRS + carbenicillin Time8hr +2.7 N.D. N.D. +1.4 N.D.
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