Fitness for 5 genes in Bifidobacterium breve UCC2003

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 747 experiments or choose conditions or try the comparative fitness browser

500 ntBBR_RS16675 and BBR_RS16680 overlap by 7 nucleotidesBBR_RS16680 and BBR_RS16685 are separated by 58 nucleotidesBBR_RS16685 and BBR_RS16690 are separated by 132 nucleotidesBBR_RS16690 and BBR_RS16695 are separated by 389 nucleotides BBR_RS16675: BBR_RS16675 - prephenate dehydrogenase/arogenate dehydrogenase family protein, at 1,512,378 to 1,513,394 _RS16675 BBR_RS16680: BBR_RS16680 - chorismate mutase, at 1,513,388 to 1,514,368 _RS16680 BBR_RS16685: BBR_RS16685 - alcohol dehydrogenase, at 1,514,427 to 1,514,867 _RS16685 BBR_RS16690: BBR_RS16690 - translational GTPase TypA, at 1,515,000 to 1,516,931 _RS16690 BBR_RS16695: BBR_RS16695 - PadR family transcriptional regulator, at 1,517,321 to 1,517,926 _RS16695
Group Condition BBR_RS16675 BBR_RS16680 BBR_RS16685 BBR_RS16690 BBR_RS16695
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos -4.8 -5.6 +0.1 N.D. -0.3
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos -4.5 -5.1 +0.0 N.D. -0.7
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2 -4.7 -2.8 -1.8 N.D. -0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day1 -3.3 -2.0 -4.1 N.D. +0.1
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse15; day1 -3.2 -1.2 -4.9 N.D. +0.1
nutrient dropout CDM1 without Glycine -3.5 -0.5 -4.1 N.D. -1.1
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day1 -3.2 -5.0 -0.3 N.D. +0.3
nutrient dropout control CDM1 -5.0 -0.3 -1.7 N.D. -0.8
nutrient dropout CDM1 without Tyrosine -5.4 -0.0 -1.3 N.D. -1.0
nutrient dropout control CDM1 -5.0 -0.2 -0.9 N.D. -1.6
nutrient dropout CDM1 without Glutathione -4.9 -0.2 -1.5 N.D. -1.1
mouse mouse 4; day 1; diet=StandardDiet; sample=FecalPellet -5.3 -0.6 -1.6 N.D. +0.0
nutrient dropout CDM1 without Isoleucine -4.5 -0.2 -1.1 N.D. -1.5
mouse coculture cage1; mouse3; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -5.3 -0.7 -1.3 N.D. -0.0
nutrient dropout CDM1 without Lysine -5.0 -0.3 -0.1 N.D. -1.8
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day1 -4.6 -1.3 -1.0 N.D. -0.3
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3 -2.1 -1.4 -3.7 N.D. +0.4
mouse coculture cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -6.3 -0.7 +1.1 N.D. +0.1
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day1 -4.6 -2.7 +1.1 N.D. +0.6
nutrient dropout CDM1 without Phenylalanine +2.3 -5.0 -2.9 N.D. +0.1
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -3.8 -2.5 +1.6 N.D. -0.8
mouse preculture cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -4.4 -1.9 +1.0 N.D. +0.2
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse15; day2 -4.8 -1.2 +1.1 N.D. +0.2
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -3.9 -1.9 +1.4 N.D. -0.2
nutrient dropout CDM1 without Phenylalanine +2.5 -5.5 -1.2 N.D. -0.4
mouse coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -5.8 -0.4 +1.6 N.D. +0.1
mouse mouse 11; day 1; diet=HighFatHighSugar; sample=FecalPellet -5.3 -0.2 +1.5 N.D. -0.2
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -5.2 -0.4 +1.8 N.D. +0.1
mouse coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -5.2 -0.3 +1.8 N.D. +0.5
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day3 -3.6 +0.2 +2.2 N.D. -1.5
remove
BBR_RS16675
plot		 remove
BBR_RS16680
plot		 remove
BBR_RS16685		 remove
BBR_RS16690
plot		 remove
BBR_RS16695
plot