Fitness for 5 genes in Bifidobacterium breve UCC2003

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BBR_RS16670	BBR_RS16675	BBR_RS16680	BBR_RS16685	BBR_RS16690
nutrient dropout	CDM1 without Glycine	-4.3	-3.5	-0.5	-4.1	N.D.
mouse	diet=StandardDiet; sample=FecalPellet; mouse1; day1	-2.4	-3.3	-2.0	-4.1	N.D.
nutrient dropout control	CDM1	-3.7	-5.0	-0.3	-1.7	N.D.
nutrient dropout	CDM1 without Tyrosine	-4.3	-4.8	-0.1	-1.3	N.D.
nutrient dropout	CDM1 without Threonine	-5.3	-4.5	-0.1	-0.3	N.D.
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	+0.1	-4.8	-5.6	+0.1	N.D.
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2	-0.8	-4.7	-2.8	-1.8	N.D.
nutrient dropout	CDM1 without Histidine	-4.7	-4.3	+0.1	-1.1	N.D.
nutrient dropout	CDM1 without Glutathione	-3.9	-4.5	-0.2	-1.3	N.D.
nutrient dropout control	CDM1	-3.8	-5.0	-0.2	-0.9	N.D.
nutrient dropout	CDM1 without Tyrosine	-3.1	-5.4	-0.0	-1.3	N.D.
nutrient dropout	CDM1 without Isoleucine	-3.9	-4.5	-0.2	-1.1	N.D.
nutrient dropout control	CDM1	-4.7	-4.9	+0.1	-0.2	N.D.
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	-0.0	-4.5	-5.1	+0.0	N.D.
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse15; day1	-0.1	-3.2	-1.2	-4.9	N.D.
nutrient dropout	CDM1 without Glutathione	-2.8	-4.9	-0.2	-1.5	N.D.
chicken	chicken 2; day 5; diet=StandardDiet; sample=FecalPellet	-4.3	-3.7	+0.1	-1.5	N.D.
nutrient dropout	CDM1 without Isoleucine	-5.1	-3.6	-0.1	-0.3	N.D.
nutrient dropout control	CDM1	-4.5	-3.6	-0.1	-1.0	N.D.
nutrient dropout	CDM1 without Lysine	-3.7	-3.7	+0.1	-1.8	N.D.
stress	Recovery broth with Irgasan 0.3 mM	-4.6	-3.5	-0.2	-0.7	N.D.
nutrient dropout	CDM1 without Nicotinate	-4.5	-4.1	-0.0	+0.6	N.D.
nutrient dropout	CDM1 without FolicAcid	-3.5	-5.0	+0.1	+0.4	N.D.
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse14; day1	-1.5	-4.6	-2.7	+1.1	N.D.
chicken coculture	chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-3.1	-3.6	-1.8	+1.1	N.D.
nutrient dropout	CDM1 without Alanine	-4.5	-3.3	-0.2	+0.8	N.D.
chicken coculture	chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-2.8	-3.9	-1.9	+1.4	N.D.
nutrient dropout	CDM1 without Phenylalanine	-0.8	+2.3	-5.0	-2.9	N.D.
nutrient dropout	CDM1 without Phenylalanine	-1.5	+2.5	-5.5	-1.2	N.D.
mouse preculture	cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	+2.0	-3.8	-2.5	+1.6	N.D.