Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS16540 and BBR_RS16545 are separated by 59 nucleotidesBBR_RS16545 and BBR_RS16550 are separated by 100 nucleotidesBBR_RS16550 and BBR_RS16555 are separated by 177 nucleotidesBBR_RS16555 and BBR_RS16560 are separated by 211 nucleotides BBR_RS16540: BBR_RS16540 - XRE family transcriptional regulator, at 1,477,478 to 1,477,996 _RS16540 BBR_RS16545: BBR_RS16545 - CinA family protein, at 1,478,056 to 1,478,613 _RS16545 BBR_RS16550: BBR_RS16550 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 1,478,714 to 1,479,349 _RS16550 BBR_RS16555: BBR_RS16555 - DNA translocase FtsK, at 1,479,527 to 1,482,382 _RS16555 BBR_RS16560: BBR_RS16560 - hypothetical protein, at 1,482,594 to 1,483,343 _RS16560
Group Condition BBR_RS16540 BBR_RS16545 BBR_RS16550 BBR_RS16555 BBR_RS16560
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day1 -7.1 -0.6 N.D. -4.7 +0.2
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day2 -6.8 +0.4 N.D. -4.7 -0.6
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 -6.8 +0.2 N.D. -4.7 +0.2
mouse preculture cage3; mouse1; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -6.2 +0.1 N.D. -4.6 -0.1
mouse mouse 2; day 1; diet=StandardDiet; sample=FecalPellet -6.9 +0.0 N.D. -3.3 -0.2
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 -6.3 +0.3 N.D. -4.2 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 -6.2 +0.0 N.D. -4.2 +0.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day2 -6.4 -0.1 N.D. -3.7 +0.2
mouse mouse 18; day 1; diet=StandardDiet_Methotrexate; sample=FecalPellet -7.0 +0.1 N.D. -3.3 +0.2
mouse mouse 16; day 1; diet=StandardDiet_Methotrexate; sample=FecalPellet -7.0 +0.1 N.D. -3.3 +0.4
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 -6.1 +0.1 N.D. -4.3 +0.5
mouse preculture cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -6.5 +0.4 N.D. -4.6 +0.8
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day3 -4.8 -0.2 N.D. -4.6 -0.2
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day2 -6.6 +0.5 N.D. -3.8 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day2 -4.9 +0.1 N.D. -4.8 -0.2
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse15; day2 -5.6 +0.3 N.D. -4.7 +0.3
nutrient dropout control CDM1 -6.2 -0.3 N.D. -3.9 +0.6
mouse mouse 12; day 1; diet=HighFatHighSugar; sample=FecalPellet -6.1 +0.1 N.D. -3.6 +0.1
mouse coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -7.9 +0.1 N.D. -1.7 +0.2
nutrient dropout CDM1 without Valine -5.7 -0.1 N.D. -4.0 +0.6
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day2 -7.1 +0.2 N.D. -2.0 -0.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day2 -5.9 +0.3 N.D. -3.5 +0.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day2 -6.2 +0.6 N.D. -3.6 +0.4
nutrient dropout CDM1 without Adenine -5.3 -0.4 N.D. -3.7 +0.7
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day4 -5.6 +0.1 N.D. -3.4 +0.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day3 -5.6 -0.0 N.D. -3.3 +0.8
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day4 -5.6 +0.3 N.D. -3.4 +0.7
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day3 -5.5 +0.6 N.D. -3.3 +0.6
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 -5.6 +0.6 N.D. -3.2 +0.8
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 -5.3 +0.4 N.D. -3.1 +0.8
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