Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS16515 and BBR_RS16520 are separated by 162 nucleotidesBBR_RS16520 and BBR_RS16525 are separated by 722 nucleotidesBBR_RS16525 and BBR_RS16530 are separated by 2 nucleotidesBBR_RS16530 and BBR_RS16535 are separated by 306 nucleotides BBR_RS16515: BBR_RS16515 - preprotein translocase subunit SecA, at 1,470,621 to 1,473,503 _RS16515 BBR_RS16520: BBR_RS16520 - ribosome-associated translation inhibitor RaiA, at 1,473,666 to 1,474,328 _RS16520 BBR_RS16525: BBR_RS16525 - RecX family transcriptional regulator, at 1,475,051 to 1,475,650 _RS16525 BBR_RS16530: BBR_RS16530 - recombinase RecA, at 1,475,653 to 1,476,831 _RS16530 BBR_RS16535: BBR_RS16535 - DUF3046 domain-containing protein, at 1,477,138 to 1,477,371 _RS16535
Group Condition BBR_RS16515 BBR_RS16520 BBR_RS16525 BBR_RS16530 BBR_RS16535
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day6 -4.0 -4.1 -1.2 -2.7 -3.4
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 -7.5 -4.0 -0.0 -3.1 -0.7
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day5 -3.3 -4.7 +0.1 -3.7 -3.0
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 -3.6 -4.2 +0.0 -3.7 -2.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 -2.1 -5.2 -0.8 -3.8 -2.0
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 -2.2 -5.7 -0.3 -4.6 -1.2
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 -4.8 -3.1 -0.1 -3.0 -2.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 -1.7 -4.3 +0.0 -3.0 -4.5
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet -5.2 -3.2 -0.6 -4.2 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 -1.7 -6.0 -0.6 -4.0 -0.7
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet -4.9 -3.4 -0.0 -3.8 -0.6
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -1.6 -5.3 -0.4 -5.0 -0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day5 -2.4 -4.6 -0.5 -2.7 -2.4
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day4 -2.3 -3.4 -0.4 -4.6 -1.5
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 -1.7 -5.6 -0.7 -3.7 -0.4
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day3 -2.7 -2.8 -0.1 -3.5 -2.9
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 -3.4 -1.8 +0.2 -4.2 -2.4
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -5.9 +0.2 -0.1 -4.5 -1.1
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day5 -2.0 -4.8 +0.0 -3.1 -1.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 -1.2 -5.0 -0.2 -2.9 -1.9
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 -1.9 -3.0 -0.1 -4.2 -2.0
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day4 -1.3 -4.7 -0.4 -4.3 -0.4
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day4 -2.7 -4.1 -1.0 -2.5 -0.4
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -2.2 -3.6 -0.9 -3.2 -0.8
chicken chicken 10; day 5; diet=StandardDiet; sample=FecalPellet -2.4 -2.7 -0.3 -4.4 -0.8
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 -1.6 -4.8 +0.3 -2.9 -1.3
mouse coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -1.5 -4.1 +0.1 -4.0 -0.8
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day4 -1.8 -5.2 -0.7 -2.7 +0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 -2.6 -4.6 -0.3 -3.0 +0.8
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine -4.1 -3.0 -0.1 -2.6 +0.6
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