Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS16500 and BBR_RS16505 are separated by 60 nucleotidesBBR_RS16505 and BBR_RS16510 are separated by 93 nucleotidesBBR_RS16510 and BBR_RS16515 are separated by 153 nucleotidesBBR_RS16515 and BBR_RS16520 are separated by 162 nucleotides BBR_RS16500: BBR_RS16500 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 1,467,867 to 1,468,577 _RS16500 BBR_RS16505: BBR_RS16505 - hypothetical protein, at 1,468,638 to 1,469,327 _RS16505 BBR_RS16510: BBR_RS16510 - anthranilate phosphoribosyltransferase, at 1,469,421 to 1,470,467 _RS16510 BBR_RS16515: BBR_RS16515 - preprotein translocase subunit SecA, at 1,470,621 to 1,473,503 _RS16515 BBR_RS16520: BBR_RS16520 - ribosome-associated translation inhibitor RaiA, at 1,473,666 to 1,474,328 _RS16520
Group Condition BBR_RS16500 BBR_RS16505 BBR_RS16510 BBR_RS16515 BBR_RS16520
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 N.D. +0.1 +0.2 -7.5 -4.0
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet N.D. +0.0 -0.1 -5.2 -3.2
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet N.D. +0.1 -0.0 -4.9 -3.4
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine N.D. -0.5 +0.0 -4.1 -3.0
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 N.D. -0.3 +0.7 -3.6 -4.2
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 N.D. +0.1 +0.6 -4.8 -3.1
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 N.D. +0.1 +0.6 -2.2 -5.7
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 N.D. +0.2 +0.3 -1.7 -6.0
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 N.D. -0.2 +0.4 -2.6 -4.6
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day6 N.D. +0.4 +1.0 -4.0 -4.1
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 N.D. -0.0 +0.5 -1.7 -5.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 N.D. +0.1 +0.5 -2.1 -5.2
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day4 N.D. -1.1 +0.3 -2.3 -3.4
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day5 N.D. +0.8 +0.8 -3.3 -4.7
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. -1.2 +0.3 -1.9 -3.7
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. +0.4 +0.1 -1.6 -5.3
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 N.D. +0.3 +0.4 -3.7 -3.2
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day5 N.D. +0.2 +0.4 -2.4 -4.6
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day5 N.D. +0.5 +0.3 -2.6 -4.4
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day4 N.D. +0.1 +0.5 -2.7 -4.1
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day5 N.D. +0.3 +0.4 -2.0 -4.8
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day4 N.D. +0.6 +0.6 -1.8 -5.2
nutrient dropout CDM1 without Tryptophan N.D. +0.5 -6.3 -0.2 +0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day3 N.D. +0.2 +0.4 -3.3 -2.9
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 N.D. +0.2 +0.5 -1.2 -5.0
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 N.D. +0.2 +0.8 -1.8 -4.5
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos N.D. -0.4 -5.8 +0.7 +0.4
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 N.D. +0.8 +0.6 -1.6 -4.8
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 N.D. +0.1 +0.9 -1.7 -4.3
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 N.D. +0.5 +0.5 -1.8 -4.2
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