Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS16405 and BBR_RS16410 are separated by 100 nucleotidesBBR_RS16410 and BBR_RS16415 are separated by 93 nucleotidesBBR_RS16415 and BBR_RS16420 overlap by 1 nucleotidesBBR_RS16420 and BBR_RS16425 are separated by 151 nucleotides BBR_RS16405: BBR_RS16405 - peptidylprolyl isomerase, at 1,437,293 to 1,437,832 _RS16405 BBR_RS16410: BBR_RS16410 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 1,437,933 to 1,440,257 _RS16410 BBR_RS16415: BBR_RS16415 - dUTP diphosphatase, at 1,440,351 to 1,440,827 _RS16415 BBR_RS16420: BBR_RS16420 - DUF4193 domain-containing protein, at 1,440,827 to 1,441,120 _RS16420 BBR_RS16425: BBR_RS16425 - DUF3071 domain-containing protein, at 1,441,272 to 1,442,345 _RS16425
Group Condition BBR_RS16405 BBR_RS16410 BBR_RS16415 BBR_RS16420 BBR_RS16425
chicken chicken 1; day 2; diet=StandardDiet; sample=FecalPellet -0.1 N.D. N.D. N.D. -6.5
chicken chicken 9; day 2; diet=StandardDiet; sample=FecalPellet +0.2 N.D. N.D. N.D. -6.4
chicken chicken 10; day 4; diet=StandardDiet; sample=FecalPellet +0.1 N.D. N.D. N.D. -6.2
chicken chicken 3; day 3; diet=StandardDiet; sample=FecalPellet +0.3 N.D. N.D. N.D. -6.5
mouse coculture cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +0.0 N.D. N.D. N.D. -6.0
mouse coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.1 N.D. N.D. N.D. -5.8
nutrient dropout CDM1 without Pyridoxamine -0.0 N.D. N.D. N.D. -5.7
chicken chicken 3; day 2; diet=StandardDiet; sample=FecalPellet +0.6 N.D. N.D. N.D. -6.4
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet +0.2 N.D. N.D. N.D. -5.9
mouse preculture cage3; mouse1; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -0.1 N.D. N.D. N.D. -5.6
mouse coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +0.2 N.D. N.D. N.D. -5.8
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet -0.1 N.D. N.D. N.D. -5.4
nutrient dropout CDM1 without Arginine -0.0 N.D. N.D. N.D. -5.3
nutrient dropout CDM1 without Tyrosine +0.0 N.D. N.D. N.D. -5.3
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet +0.5 N.D. N.D. N.D. -5.7
nutrient dropout CDM1 without Glutamine -0.0 N.D. N.D. N.D. -5.2
nutrient dropout CDM1 without Glycine -0.2 N.D. N.D. N.D. -5.0
nutrient dropout control CDM1 -0.0 N.D. N.D. N.D. -5.2
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.3 N.D. N.D. N.D. -5.5
nutrient dropout control CDM1 +0.3 N.D. N.D. N.D. -5.4
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.3 N.D. N.D. N.D. -5.4
nutrient dropout CDM1 without Cyanocobalamin +0.1 N.D. N.D. N.D. -5.1
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day2 +0.2 N.D. N.D. N.D. -5.2
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day1 +0.1 N.D. N.D. N.D. -5.1
mouse coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +0.3 N.D. N.D. N.D. -5.1
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day1 +0.2 N.D. N.D. N.D. -5.0
nutrient dropout CDM1 without Adenine +0.4 N.D. N.D. N.D. -5.2
nutrient dropout CDM1 without Lysine +0.6 N.D. N.D. N.D. -5.2
nutrient dropout CDM1 without Arginine +0.4 N.D. N.D. N.D. -5.0
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day1 +0.3 N.D. N.D. N.D. -4.8
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