Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS16350 and BBR_RS16355 overlap by 1 nucleotidesBBR_RS16355 and BBR_RS16360 are separated by 2 nucleotidesBBR_RS16360 and BBR_RS16365 are separated by 195 nucleotidesBBR_RS16365 and BBR_RS16370 are separated by 269 nucleotides BBR_RS16350: BBR_RS16350 - carbohydrate ABC transporter permease, at 1,419,799 to 1,420,656 _RS16350 BBR_RS16355: BBR_RS16355 - sugar ABC transporter permease, at 1,420,656 to 1,421,594 _RS16355 BBR_RS16360: BBR_RS16360 - sugar ABC transporter substrate-binding protein, at 1,421,597 to 1,422,868 _RS16360 BBR_RS16365: BBR_RS16365 - alpha-mannosidase, at 1,423,064 to 1,426,168 _RS16365 BBR_RS16370: BBR_RS16370 - alpha-mannosidase, at 1,426,438 to 1,429,578 _RS16370
Group Condition BBR_RS16350 BBR_RS16355 BBR_RS16360 BBR_RS16365 BBR_RS16370
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -1.1 -1.2 -1.5 -1.4 -1.2
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -1.2 -1.1 -0.8 -0.8 -1.3
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet -0.4 -1.0 -0.6 -0.5 -1.4
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2 +0.3 -1.3 -0.6 -0.4 -1.0
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3 +0.4 -1.1 +0.1 -0.4 -0.5
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 +0.7 +0.5 +0.3 +0.5 +0.5
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 +0.3 +0.9 +0.1 +0.6 +0.6
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day5 +0.5 +0.7 +0.1 +0.5 +0.7
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 +0.6 +0.5 +0.6 +0.6 +0.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day4 +0.6 +0.7 +0.2 +0.7 +0.2
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day5 +0.5 +0.6 +0.2 +0.7 +0.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 +0.3 +0.8 +0.3 +0.6 +0.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day4 +0.4 +0.5 +0.5 +0.7 +0.5
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day4 +0.4 +0.6 +0.5 +0.7 +0.4
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day3 +0.2 +0.8 +0.5 +0.6 +0.6
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day5 +0.6 +1.0 +0.1 +0.8 +0.2
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 +0.5 +0.7 +0.3 +0.6 +0.5
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 +0.5 +0.9 +0.3 +0.6 +0.5
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day5 +0.3 +0.8 +0.4 +0.6 +0.7
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 +0.8 +0.6 +0.4 +0.7 +0.5
chicken chicken 3; day 3; diet=StandardDiet; sample=FecalPellet +0.7 +0.5 +0.7 +0.6 +0.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 +0.4 +0.9 +0.2 +1.0 +0.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 +0.7 +1.0 +0.4 +0.6 +0.5
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day6 +0.6 +1.0 +0.7 +0.7 +0.6
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet +0.8 +0.8 +1.3 +1.1 +1.1
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet +1.1 +1.0 +1.3 +1.2 +0.8
chicken chicken 10; day 4; diet=StandardDiet; sample=FecalPellet +1.1 +1.1 +1.2 +1.1 +0.9
chicken chicken 10; day 5; diet=StandardDiet; sample=FecalPellet +1.0 +0.9 +1.3 +1.2 +1.1
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine +1.8 +1.5 +0.9 +1.3 +1.3
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum +1.9 +1.3 +1.0 +1.4 +1.5
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BBR_RS16350
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