Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS16320 and BBR_RS16325 are separated by 66 nucleotidesBBR_RS16325 and BBR_RS16330 are separated by 121 nucleotidesBBR_RS16330 and BBR_RS16335 are separated by 295 nucleotidesBBR_RS16335 and BBR_RS16340 are separated by 77 nucleotides BBR_RS16320: BBR_RS16320 - metal-independent alpha-mannosidase, at 1,408,744 to 1,410,042 _RS16320 BBR_RS16325: BBR_RS16325 - AGE family epimerase/isomerase, at 1,410,109 to 1,411,344 _RS16325 BBR_RS16330: BBR_RS16330 - LacI family transcriptional regulator, at 1,411,466 to 1,412,572 _RS16330 BBR_RS16335: BBR_RS16335 - PKD domain-containing protein, at 1,412,868 to 1,415,651 _RS16335 BBR_RS16340: BBR_RS16340 - DUF5110 domain-containing protein, at 1,415,729 to 1,418,218 _RS16340
Group Condition BBR_RS16320 BBR_RS16325 BBR_RS16330 BBR_RS16335 BBR_RS16340
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet -1.2 -4.2 +3.2 +0.3 -0.3
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine -0.4 -2.4 +5.0 +0.1 -0.0
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum -0.5 -2.4 +5.2 -0.1 +0.1
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day4 -0.3 -0.9 +7.8 -0.0 -0.6
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 -0.0 -0.4 +7.4 -0.4 +0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 -0.3 -0.7 +7.6 -0.1 +0.3
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day3 -0.1 -0.7 +8.3 +0.0 -0.4
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 -0.1 -0.1 +7.7 -0.2 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 -0.4 -0.2 +7.9 +0.2 -0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 +0.3 -0.3 +7.1 -0.0 +0.3
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day4 -0.2 +0.0 +7.7 -0.1 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day3 +0.3 -0.2 +7.7 +0.1 -0.0
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day4 +0.4 -0.2 +7.3 +0.1 +0.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day3 +0.2 -0.1 +7.3 +0.3 +0.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day4 +0.2 +0.0 +7.4 +0.2 +0.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 -0.3 +0.3 +7.0 +0.4 +0.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day3 +0.1 -0.2 +7.5 +0.2 +0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day5 +0.5 -0.1 +7.1 +0.1 +0.5
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 +0.2 -0.2 +8.2 -0.2 +0.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 -0.3 -0.1 +8.3 +0.1 +0.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day4 -0.2 -0.3 +8.3 +0.1 +0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 +0.4 -0.1 +8.0 -0.1 +0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 +0.2 +0.2 +8.0 -0.0 +0.0
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 +0.4 -0.0 +8.3 -0.3 +0.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 +0.6 +0.4 +6.8 +0.3 +0.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day4 +0.2 -0.2 +8.2 +0.2 +0.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 +0.2 -0.1 +8.4 +0.2 +0.0
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day3 +0.3 -0.1 +7.9 +0.2 +0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 +0.4 -0.2 +8.0 +0.3 +0.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 +0.4 -0.1 +8.5 -0.2 +0.5
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