Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS16295 and BBR_RS16300 are separated by 83 nucleotidesBBR_RS16300 and BBR_RS16305 are separated by 234 nucleotidesBBR_RS16305 and BBR_RS16310 are separated by 74 nucleotidesBBR_RS16310 and BBR_RS16315 are separated by 171 nucleotides BBR_RS16295: BBR_RS16295 - DNA methyltransferase, at 1,403,192 to 1,404,463 _RS16295 BBR_RS16300: BBR_RS16300 - pyridoxamine 5'-phosphate oxidase family protein, at 1,404,547 to 1,404,951 _RS16300 BBR_RS16305: BBR_RS16305 - EamA family transporter, at 1,405,186 to 1,406,121 _RS16305 BBR_RS16310: BBR_RS16310 - hypothetical protein, at 1,406,196 to 1,406,894 _RS16310 BBR_RS16315: BBR_RS16315 - hypothetical protein, at 1,407,066 to 1,408,268 _RS16315
Group Condition BBR_RS16295 BBR_RS16300 BBR_RS16305 BBR_RS16310 BBR_RS16315
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse15; day2 +0.4 -8.0 -0.2 -0.4 -0.2
mouse coculture cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +0.2 -8.2 -0.1 -0.2 -0.2
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 -0.6 -7.1 -0.3 -0.1 +0.0
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day1 +0.1 -8.0 -0.2 +0.0 -0.1
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day2 -0.1 -7.9 +0.3 -0.4 -0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day2 +0.0 -6.9 +0.0 -1.0 -0.2
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day2 +0.2 -7.9 +0.0 -0.3 -0.0
mouse coculture cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.2 -7.6 +0.1 -0.0 -0.2
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day3 -0.1 -7.5 -0.0 +0.0 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day1 +0.3 -8.0 +0.2 -0.0 -0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 -0.3 -7.2 +0.2 -0.2 +0.1
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day2 +0.6 -8.1 +0.3 -0.0 -0.1
mouse coculture cage1; mouse2; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +0.2 -6.9 -0.3 -0.3 +0.1
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day3 -0.4 -7.5 +0.1 +0.2 +0.4
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 +0.0 -7.6 +0.2 +0.3 -0.1
mouse mouse 3; day 1; diet=StandardDiet; sample=FecalPellet +0.0 -7.3 +0.1 +0.1 +0.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day3 -1.4 -6.3 +0.1 +0.3 +0.3
mouse preculture cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs +0.4 -6.9 +0.1 -0.7 +0.1
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day4 -0.2 -7.4 +0.4 +0.0 +0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 +0.2 -7.7 +0.7 +0.1 -0.2
mouse mouse 18; day 1; diet=StandardDiet_Methotrexate; sample=FecalPellet +0.3 -6.6 +0.1 -0.3 -0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day3 -0.5 -6.3 +0.2 +0.2 -0.1
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 +0.2 -7.1 +0.4 +0.1 +0.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day2 +0.3 -6.7 -0.2 +0.5 -0.0
mouse coculture cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +0.4 -6.8 +0.3 +0.1 -0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 -0.3 -6.6 +0.6 +0.1 +0.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day2 +0.6 -6.2 -0.4 +0.1 +0.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 -1.0 -4.8 +0.6 -0.9 +0.3
mouse mouse 12; day 1; diet=HighFatHighSugar; sample=FecalPellet +0.2 -6.6 -0.0 +0.3 +0.3
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.2 -6.3 +0.3 +0.4 +0.2
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