Fitness for 5 genes in Bifidobacterium breve UCC2003

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BBR_RS16165	BBR_RS16170	BBR_RS16175	BBR_RS16180	BBR_RS16185
mouse	diet=StandardDiet; sample=FecalPellet; mouse1; day3	+0.4	-5.9	+1.0	-0.5	-0.2
mouse	diet=StandardDiet; sample=FecalPellet; mouse3; day4	-0.7	-4.4	+0.9	-0.4	+0.2
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3	+0.3	-3.8	-0.0	-0.5	-0.2
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day2	-0.8	-1.7	-1.2	-0.4	+0.1
mouse	diet=StandardDiet; sample=FecalPellet; mouse5; day6	-0.0	-4.0	+0.2	+0.1	-0.1
mouse	mouse 11; day 1; diet=HighFatHighSugar; sample=FecalPellet	-0.2	-2.3	-0.8	+0.4	-0.2
nutrient dropout	CDM1 without Phenylalanine	-0.5	-0.7	-2.3	+0.2	+0.4
mouse	diet=StandardDiet2; sample=FecalPellet; mouse17; day4	-0.5	-2.0	+0.4	-0.4	+0.1
mouse preculture	cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	+0.4	+0.1	-3.3	+0.4	-0.0
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day3	-0.7	-1.7	+0.6	-0.4	+0.2
mouse	diet=StandardDiet2; sample=FecalPellet; mouse16; day4	-0.4	-1.9	+0.5	-0.5	+0.3
mouse	mouse 12; day 1; diet=HighFatHighSugar; sample=FecalPellet	-0.5	+0.3	-3.1	+0.4	+1.0
mouse	diet=StandardDiet; sample=FecalPellet; mouse5; day4	-0.1	-2.3	+0.7	-0.4	+0.2
stress	Recovery broth with Gentamicin 0.4 mM	-0.5	+0.7	-1.9	-0.3	+0.3
nutrient dropout	CDM1 without Adenine	-1.4	-0.6	-1.0	+0.8	+0.5
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day3	+0.7	-2.4	+0.2	-0.6	+0.5
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3	-0.9	-1.3	-0.4	+0.6	+0.7
chicken	chicken 2; day 6; diet=StandardDiet; sample=FecalPellet	+0.9	+0.4	-1.8	-0.1	-0.7
nutrient dropout	CDM1 without Cysteine	-0.6	-1.9	+0.6	+0.4	+0.3
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5	-0.7	-1.0	+1.1	-0.7	+0.3
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2	-2.4	-0.7	+1.7	+0.2	+0.3
mouse	diet=StandardDiet; sample=FecalPellet; mouse4; day5	-0.0	-1.5	+1.1	-0.8	+0.5
mrs timecourse	MRS Time48hr	-0.6	-1.7	+1.6	+0.3	+0.0
stress timecourse	MRS + carbenicillin Time24hr	-0.3	-1.4	+1.7	+0.0	-0.1
mouse	diet=StandardDiet2; sample=FecalPellet; mouse18; day4	+0.4	-1.2	+1.2	-0.6	+0.4
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5	+0.4	-1.6	+1.3	-0.3	+0.4
nutrient dropout	CDM1 without Tyrosine	-1.4	+0.5	+0.6	+0.4	+0.6
mrs timecourse	MRS Time24hr	+0.4	-0.5	+1.7	+0.2	-0.7
stress	Recovery broth with Thioridazine 0.1 mM	+0.4	+1.8	-0.9	+0.3	-0.3
nutrient dropout	CDM1 without Nicotinate	-1.0	+0.7	+0.7	+0.5	+0.8