Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS16130 and BBR_RS16135 are separated by 335 nucleotidesBBR_RS16135 and BBR_RS16140 are separated by 6 nucleotidesBBR_RS16140 and BBR_RS16145 are separated by 75 nucleotidesBBR_RS16145 and BBR_RS16150 are separated by 145 nucleotides BBR_RS16130: BBR_RS16130 - 30S ribosomal protein S2, at 1,367,020 to 1,367,859 _RS16130 BBR_RS16135: BBR_RS16135 - peptide deformylase, at 1,368,195 to 1,368,680 _RS16135 BBR_RS16140: BBR_RS16140 - long-chain fatty acid--CoA ligase, at 1,368,687 to 1,370,747 _RS16140 BBR_RS16145: BBR_RS16145 - hypothetical protein, at 1,370,823 to 1,371,311 _RS16145 BBR_RS16150: BBR_RS16150 - GuaB3 family IMP dehydrogenase-related protein, at 1,371,457 to 1,372,581 _RS16150
Group Condition BBR_RS16130 BBR_RS16135 BBR_RS16140 BBR_RS16145 BBR_RS16150
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. -4.6 -1.7 +0.2 -2.0
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet N.D. -3.5 -1.9 +0.4 -2.7
chicken chicken 1; day 2; diet=StandardDiet; sample=FecalPellet N.D. -4.2 -2.4 +0.0 -1.0
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 N.D. -6.4 +0.2 -0.4 -0.1
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day1 N.D. -6.7 -0.2 +0.3 -0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day2 N.D. -6.5 +0.4 +0.3 +0.1
stress Recovery broth with Dimetridazole 0.1 mM N.D. -5.2 -0.0 +0.1 -0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 N.D. -5.8 +0.1 +0.1 +0.4
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet N.D. -1.9 -1.5 -0.0 -1.8
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 N.D. -4.5 +0.2 -0.1 -0.3
stress Recovery broth with Isovaleric 50 mM N.D. -4.4 -0.3 +0.2 -0.0
nutrient dropout CDM1 without Adenine N.D. -1.0 +0.3 -0.2 -3.4
stress Recovery broth with Nitrofurazone 0.008 mM N.D. -3.7 -0.7 +0.2 -0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 N.D. -4.1 +0.2 -0.3 -0.1
stress Recovery broth with Nitrofurazone 0.02 mM N.D. -3.9 -0.4 +0.0 +0.1
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. -2.8 -0.4 +0.2 -1.0
stress Recovery broth with Isovaleric 100 mM N.D. -3.9 -0.4 +0.0 +0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day2 N.D. -3.0 +0.2 -0.1 -1.1
nutrient dropout CDM1 without Adenine N.D. +1.0 +0.1 -0.1 -4.6
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 N.D. -2.6 +0.6 -0.3 -1.1
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. -4.1 +2.4 -0.8 +0.5
stress Recovery broth with Streptomycin 0.3 mM N.D. -1.2 -1.6 -0.6 +2.0
supernatant CDM1Gut with 50% spent media from Escherichia fergusonnii TT2 N.D. -2.1 +0.9 +0.9 -0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 N.D. +1.7 +0.9 -0.2 -1.8
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 N.D. +1.8 +1.2 -0.5 -1.4
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse15; day3 N.D. +2.1 +0.5 -1.7 +0.1
nutrient dropout CDM1 without Phenylalanine N.D. +2.7 +1.1 -0.1 -0.9
nutrient dropout CDM1 without Phenylalanine N.D. +3.1 +1.3 +0.4 -0.8
carbon source reconstituted MRS with D-Galactose 56 mM N.D. +4.4 +0.2 -0.1 +0.1
carbon source reconstituted MRS with D-Galactose 56 mM N.D. +4.2 +0.4 +0.1 +0.1
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