Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS15840 and BBR_RS20930 are separated by 330 nucleotidesBBR_RS20930 and BBR_RS15845 are separated by 56 nucleotidesBBR_RS15845 and BBR_RS20935 are separated by 10 nucleotidesBBR_RS20935 and BBR_RS15850 are separated by 61 nucleotides BBR_RS15840: BBR_RS15840 - VanZ family protein, at 1,319,391 to 1,320,404 _RS15840 BBR_RS20930: BBR_RS20930 - hypothetical protein, at 1,320,735 to 1,321,001 _RS20930 BBR_RS15845: BBR_RS15845 - hypothetical protein, at 1,321,058 to 1,321,327 _RS15845 BBR_RS20935: BBR_RS20935 - hypothetical protein, at 1,321,338 to 1,321,659 _RS20935 BBR_RS15850: BBR_RS15850 - ASCH domain-containing protein, at 1,321,721 to 1,322,179 _RS15850
Group Condition BBR_RS15840 BBR_RS20930 BBR_RS15845 BBR_RS20935 BBR_RS15850
nutrient dropout CDM1 without Aspartate +0.2 -0.9 -2.9 -7.6 -1.4
nutrient dropout CDM1 without Proline -0.2 -5.2 -2.6 -2.6 -1.9
nutrient dropout CDM1 without Cytosine +0.1 -3.3 -2.7 -3.5 -2.0
nutrient dropout CDM1 without Biotin +0.1 -2.2 -1.1 -5.9 -1.4
nutrient dropout CDM1 without Adenine +0.0 -2.1 -2.7 -1.9 -3.9
nutrient dropout CDM1 without Pyridoxamine +0.1 -0.3 -3.0 -5.7 -1.5
nutrient dropout CDM1 without Adenine +0.5 -1.9 -2.8 -3.9 -2.4
nutrient dropout CDM1 without Histidine +0.1 -1.2 -1.8 -4.5 -2.8
nutrient dropout CDM1 without Isoleucine +0.4 -1.1 -2.8 -4.5 -2.2
nutrient dropout CDM1 without Uracil +0.6 -1.4 -2.8 -5.3 -1.3
nutrient dropout control CDM1 +0.3 -0.7 -2.7 -5.4 -1.2
nutrient dropout control CDM1 -0.2 -0.9 -2.8 -2.5 -3.0
nutrient dropout CDM1 without Lysine +0.1 -0.3 -2.7 -5.2 -1.2
nutrient dropout CDM1 without Thiamine -0.0 -1.5 -2.7 -3.3 -1.8
nutrient dropout CDM1 without Arginine +0.0 -3.4 -1.7 -2.4 -1.6
nutrient dropout control CDM1 +0.2 -2.2 -2.8 -3.5 -0.8
nutrient dropout CDM1 without Alanine +0.2 -1.0 -2.4 -3.5 -2.1
nutrient dropout CDM1 without Isoleucine -0.1 -1.6 -2.7 -2.1 -2.1
nutrient dropout CDM1 without Alanine +0.1 -0.9 -2.7 -3.8 -1.1
nutrient dropout control CDM1 +0.3 -1.1 -2.6 -3.4 -1.5
nutrient dropout CDM1 without Guanine +0.3 -1.1 -1.8 -4.1 -1.3
nutrient dropout CDM1 without Glutathione +0.2 -0.4 -3.0 -2.9 -2.0
nutrient dropout CDM1 without Glutamine +0.4 -1.1 -1.6 -4.5 -1.1
nutrient dropout CDM1 without Asparagine +0.4 -0.1 -2.9 -4.0 -1.0
nutrient dropout CDM1 without Glycine +0.6 -0.2 -3.0 -2.6 -2.2
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day4 -0.4 -1.9 -2.4 -2.7 +1.5
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 -0.5 -1.2 -1.9 -4.0 +1.8
stress Recovery broth with Ciprofloxacin 0.1 mM -1.1 +1.0 -2.1 -3.8 +0.9
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3 -0.6 +0.7 +2.6 -4.5 -3.1
carbon source reconstituted MRS with Difucosyllactose 7.9 mM +0.0 -4.7 +2.4 +1.2 -1.0
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