Fitness for 5 genes in Bifidobacterium breve UCC2003

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BBR_RS15805	BBR_RS15810	BBR_RS15815	BBR_RS15820	BBR_RS15825
nutrient dropout	CDM1 without Tryptophan	-4.3	-5.6	-5.3	+0.0	-0.1
nutrient dropout	CDM1 without Tryptophan	-2.5	-5.3	-5.8	-0.0	-0.3
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	-0.9	-5.4	-5.8	+0.8	+0.2
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	-1.1	-3.8	-4.6	+1.1	+0.1
mouse coculture	cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-5.8	-0.2	-0.5	-0.4	+0.2
mouse coculture	cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-5.2	-0.1	-0.5	-0.4	+0.2
mouse coculture	cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-5.6	+0.2	-0.1	-0.2	-0.2
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse12; day1	-5.7	-0.1	+0.2	+0.1	-0.3
mouse coculture	cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-4.9	-0.1	-0.3	-0.3	-0.0
mouse coculture	cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-4.1	-0.3	-0.5	-0.8	+0.2
chicken	chicken 1; day 2; diet=StandardDiet; sample=FecalPellet	-5.2	+0.1	-0.1	+0.1	-0.2
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2	-5.8	-0.0	+0.0	+0.2	+0.4
mouse	diet=StandardDiet2; sample=FecalPellet; mouse18; day4	-5.5	+0.1	+0.0	-0.2	+0.4
chicken	chicken 5; day 6; diet=StandardDiet; sample=FecalPellet	-4.4	-0.2	-0.2	-0.2	-0.3
mouse	diet=StandardDiet; sample=FecalPellet; mouse5; day3	-3.6	-0.9	-0.0	-0.8	+0.2
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2	-4.9	+0.2	+0.1	-0.0	-0.3
mouse coculture	cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-4.5	-0.1	-0.2	-0.4	+0.2
mouse preculture	cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	-5.1	-0.1	-0.2	+0.4	+0.2
mouse coculture	cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-5.0	+0.1	-0.1	-0.1	+0.2
mouse	diet=StandardDiet; sample=FecalPellet; mouse1; day4	-4.7	+0.3	-0.1	-0.4	+0.3
mouse	diet=StandardDiet; sample=FecalPellet; mouse4; day1	-4.5	-0.1	+0.1	+0.3	-0.3
mouse	diet=StandardDiet; sample=FecalPellet; mouse1; day2	-4.6	+0.4	-0.1	+0.1	-0.2
mouse	mouse 4; day 1; diet=StandardDiet; sample=FecalPellet	-4.6	+0.2	+0.1	-0.1	+0.1
mouse	diet=StandardDiet; sample=FecalPellet; mouse3; day4	-4.3	+0.2	-0.1	-0.3	+0.3
nutrient dropout	CDM1 without Glutamine	-3.7	+0.4	+0.3	-0.9	-0.2
chicken coculture	chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-4.3	+0.6	-0.0	-0.3	+0.0
mouse	diet=StandardDiet; sample=FecalPellet; mouse1; day3	-4.2	-0.2	-0.4	+0.7	+0.2
mouse	diet=StandardDiet; sample=FecalPellet; mouse2; day4	-3.8	+0.2	-0.3	-0.3	+0.5
mouse	diet=StandardDiet2; sample=FecalPellet; mouse17; day4	-4.1	+0.4	-0.2	-0.1	+0.3
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse15; day1	-4.4	+0.3	+0.2	+0.2	+0.4