Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS15740 and BBR_RS15745 are separated by 108 nucleotidesBBR_RS15745 and BBR_RS15750 are separated by 23 nucleotidesBBR_RS15750 and BBR_RS15755 are separated by 50 nucleotidesBBR_RS15755 and BBR_RS15760 are separated by 116 nucleotides BBR_RS15740: BBR_RS15740 - RNA polymerase-binding protein RbpA, at 1,302,704 to 1,303,051 _RS15740 BBR_RS15745: BBR_RS15745 - hydrolase or phosphatase, at 1,303,160 to 1,303,879 _RS15745 BBR_RS15750: BBR_RS15750 - hypothetical protein, at 1,303,903 to 1,304,127 _RS15750 BBR_RS15755: BBR_RS15755 - hypothetical protein, at 1,304,178 to 1,304,585 _RS15755 BBR_RS15760: BBR_RS15760 - MerR family transcriptional regulator, at 1,304,702 to 1,305,334 _RS15760
Group Condition BBR_RS15740 BBR_RS15745 BBR_RS15750 BBR_RS15755 BBR_RS15760
stress Recovery broth with 3-Acetylpyridine 0.08 mM N.D. -2.6 -2.1 -4.9 -0.4
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day4 N.D. +0.2 +2.0 -4.0 -7.9
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 N.D. -3.2 +3.4 -4.3 -5.0
nutrient dropout CDM1 without Proline N.D. +0.5 -4.5 -5.5 +0.5
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet N.D. +1.1 -1.0 -3.9 -4.3
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2 N.D. +1.8 -4.7 -4.1 -0.8
mouse preculture cage3; mouse2; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. -0.6 +0.2 -6.1 -1.2
stress Recovery broth with Benzethonium chloride 0.1 mM N.D. -3.1 -4.6 -0.6 +0.9
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day1 N.D. -0.0 -6.3 +0.4 -1.5
nutrient dropout control CDM1 N.D. -0.1 -2.0 -5.6 +0.5
stress Recovery broth with Ciprofloxacin 0.1 mM N.D. +1.3 -4.1 -3.6 -0.5
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day3 N.D. -1.4 +2.6 -5.3 -1.6
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet N.D. +1.3 +0.2 -1.4 -5.7
nutrient dropout control CDM1 N.D. -0.1 -1.1 -5.5 +1.3
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day5 N.D. -0.1 +3.0 -4.1 -4.0
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day3 N.D. +0.5 +2.0 -5.8 -1.8
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day5 N.D. -0.8 +2.1 -3.0 -3.1
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 N.D. -1.6 +1.8 -3.2 -1.8
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 N.D. -1.5 +2.1 -2.2 -3.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day3 N.D. -0.6 +2.7 -5.2 -1.4
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 N.D. -0.1 +2.2 -2.7 -3.5
nutrient dropout CDM1 without Alanine N.D. +0.8 -0.8 -5.4 +1.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 N.D. +0.1 +3.2 -1.3 -5.6
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day5 N.D. -0.8 +2.8 -2.5 -2.6
mouse coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -0.7 +2.8 -2.2 -2.8
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day4 N.D. -0.4 +2.8 -3.1 -2.2
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. +0.8 +1.8 -2.4 -2.7
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 N.D. +0.2 +3.5 -4.4 -1.7
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 N.D. +0.6 +3.4 -1.8 -4.0
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day5 N.D. +0.9 +2.9 +1.1 -4.5
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