Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS15710 and BBR_RS15715 are separated by 62 nucleotidesBBR_RS15715 and BBR_RS15720 are separated by 97 nucleotidesBBR_RS15720 and BBR_RS15725 are separated by 140 nucleotidesBBR_RS15725 and BBR_RS15730 are separated by 12 nucleotides BBR_RS15710: BBR_RS15710 - tRNA-Pro, at 1,295,022 to 1,295,095 _RS15710 BBR_RS15715: BBR_RS15715 - Cof-type HAD-IIB family hydrolase, at 1,295,158 to 1,295,997 _RS15715 BBR_RS15720: BBR_RS15720 - UTP--glucose-1-phosphate uridylyltransferase, at 1,296,095 to 1,297,597 _RS15720 BBR_RS15725: BBR_RS15725 - WYL domain-containing protein, at 1,297,738 to 1,299,651 _RS15725 BBR_RS15730: BBR_RS15730 - hypothetical protein, at 1,299,664 to 1,299,981 _RS15730
Group Condition BBR_RS15710 BBR_RS15715 BBR_RS15720 BBR_RS15725 BBR_RS15730
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. -0.2 N.D. N.D. -4.4
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet N.D. +0.1 N.D. N.D. -3.9
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day2 N.D. -0.0 N.D. N.D. -3.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 N.D. +0.4 N.D. N.D. -4.0
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet N.D. -0.2 N.D. N.D. -3.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 N.D. -0.1 N.D. N.D. -3.3
mouse coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -0.5 N.D. N.D. -2.8
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 N.D. -0.2 N.D. N.D. -3.0
stress Recovery broth with 3-Acetylpyridine 0.08 mM N.D. +0.3 N.D. N.D. -3.4
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. +0.1 N.D. N.D. -3.2
stress Recovery broth with Benzethonium chloride 0.1 mM N.D. -0.2 N.D. N.D. -2.9
chicken chicken 1; day 2; diet=StandardDiet; sample=FecalPellet N.D. -0.2 N.D. N.D. -2.8
mouse preculture cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. +0.1 N.D. N.D. -3.1
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 N.D. +0.3 N.D. N.D. -3.3
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 N.D. +0.2 N.D. N.D. -3.2
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 N.D. +0.3 N.D. N.D. -3.2
mouse coculture cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -0.7 N.D. N.D. -2.1
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2 N.D. +0.6 N.D. N.D. -3.2
nutrient dropout CDM1 without Glycine N.D. -0.8 N.D. N.D. -1.8
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day5 N.D. +0.2 N.D. N.D. -2.8
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day4 N.D. +0.3 N.D. N.D. -2.8
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 N.D. +0.2 N.D. N.D. -2.6
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet N.D. +0.2 N.D. N.D. -2.6
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 N.D. +0.3 N.D. N.D. -2.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 N.D. +0.4 N.D. N.D. -2.5
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 N.D. +0.7 N.D. N.D. -2.5
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day3 N.D. +0.5 N.D. N.D. -2.3
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum N.D. +1.1 N.D. N.D. -1.7
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3 N.D. -1.7 N.D. N.D. +1.3
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3 N.D. +2.2 N.D. N.D. -1.4
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