Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS15680 and BBR_RS15685 are separated by 19 nucleotidesBBR_RS15685 and BBR_RS15690 overlap by 53 nucleotidesBBR_RS15690 and BBR_RS20920 are separated by 154 nucleotidesBBR_RS20920 and BBR_RS15695 overlap by 102 nucleotides BBR_RS15680: BBR_RS15680 - succinate--CoA ligase subunit alpha, at 1,286,618 to 1,287,529 _RS15680 BBR_RS15685: BBR_RS15685 - hypothetical protein, at 1,287,549 to 1,288,934 _RS15685 BBR_RS15690: BBR_RS15690 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH, at 1,288,882 to 1,290,519 _RS15690 BBR_RS20920: BBR_RS20920 - hypothetical protein, at 1,290,674 to 1,290,976 _RS20920 BBR_RS15695: BBR_RS15695 - membrane channel protein, at 1,290,875 to 1,291,813 _RS15695
Group Condition BBR_RS15680 BBR_RS15685 BBR_RS15690 BBR_RS20920 BBR_RS15695
chicken chicken 3; day 3; diet=StandardDiet; sample=FecalPellet -6.8 -4.1 N.D. -4.3 -5.6
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet -5.9 -4.3 N.D. -5.3 -5.1
chicken chicken 10; day 5; diet=StandardDiet; sample=FecalPellet -6.6 -3.7 N.D. -5.3 -4.9
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet -5.2 -5.0 N.D. -4.8 -5.3
chicken chicken 3; day 2; diet=StandardDiet; sample=FecalPellet -6.5 -3.1 N.D. -4.7 -5.3
chicken chicken 1; day 2; diet=StandardDiet; sample=FecalPellet -6.6 -3.3 N.D. -4.1 -5.6
chicken chicken 10; day 4; diet=StandardDiet; sample=FecalPellet -6.4 -3.4 N.D. -4.8 -4.3
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet -5.9 -4.1 N.D. -3.5 -4.7
chicken chicken 9; day 2; diet=StandardDiet; sample=FecalPellet -7.0 -2.0 N.D. -3.9 -5.2
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet -5.0 -3.7 N.D. -4.1 -4.9
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine -4.5 -3.7 N.D. -3.8 -4.8
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -5.1 -2.4 N.D. -4.9 -3.8
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum -4.7 -3.5 N.D. -3.2 -4.3
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -4.9 -3.0 N.D. -4.0 -2.6
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -5.1 -2.4 N.D. -3.9 -3.0
nutrient dropout CDM1 without Lysine -6.2 -1.0 N.D. -5.2 +0.1
nutrient dropout CDM1 without Guanine -5.9 +0.0 N.D. -4.9 -0.1
nutrient dropout CDM1 without Histidine -6.3 -0.4 N.D. -4.3 +0.6
nutrient dropout CDM1 without Nicotinate -6.0 -0.1 N.D. -4.4 +0.1
nutrient dropout CDM1 without Cytosine -5.5 -0.3 N.D. -4.1 -0.2
nutrient dropout CDM1 without Biotin -5.4 -0.1 N.D. -4.1 -0.4
nutrient dropout CDM1 without Glycine -5.6 -0.4 N.D. -4.8 +0.9
nutrient dropout CDM1 without Isoleucine -5.6 -0.0 N.D. -3.9 -0.3
nutrient dropout CDM1 without Phenylalanine -5.0 -0.4 N.D. -3.9 -0.4
nutrient dropout control CDM1 -5.9 -0.4 N.D. -3.3 -0.1
nutrient dropout CDM1 without Proline -5.4 -0.4 N.D. -4.1 +0.3
nutrient dropout CDM1 without Pantothenate -5.4 -0.4 N.D. -3.8 +0.1
nutrient dropout CDM1 without Threonine -6.3 -0.6 N.D. -2.4 +0.1
nutrient dropout CDM1 without Pyridoxamine -5.4 -0.5 N.D. -3.7 +0.8
nutrient dropout CDM1 without Nicotinate -5.7 -0.2 N.D. -3.1 +0.4
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