Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS15570 and BBR_RS15575 are separated by 126 nucleotidesBBR_RS15575 and BBR_RS15580 are separated by 73 nucleotidesBBR_RS15580 and BBR_RS15585 are separated by 260 nucleotidesBBR_RS15585 and BBR_RS15590 are separated by 54 nucleotides BBR_RS15570: BBR_RS15570 - branched-chain amino acid transport system II carrier protein, at 1,267,255 to 1,268,592 _RS15570 BBR_RS15575: BBR_RS15575 - transaldolase, at 1,268,719 to 1,269,822 _RS15575 BBR_RS15580: BBR_RS15580 - transketolase, at 1,269,896 to 1,272,004 _RS15580 BBR_RS15585: BBR_RS15585 - heat-inducible transcriptional repressor HrcA, at 1,272,265 to 1,273,362 _RS15585 BBR_RS15590: BBR_RS15590 - molecular chaperone DnaJ, at 1,273,417 to 1,274,562 _RS15590
Group Condition BBR_RS15570 BBR_RS15575 BBR_RS15580 BBR_RS15585 BBR_RS15590
nutrient dropout CDM1 without Leucine -4.3 N.D. N.D. -0.2 -0.5
nutrient dropout CDM1 without Leucine -3.5 N.D. N.D. -0.3 -0.8
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.1 N.D. N.D. -0.1 -3.7
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet +0.2 N.D. N.D. -0.1 -3.8
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -0.1 N.D. N.D. +0.7 -3.5
supernatant CDM1Gut with 50% spent media from Escherichia fergusonnii TT2 -1.9 N.D. N.D. +0.5 -1.1
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -0.1 N.D. N.D. -0.2 -2.2
nutrient dropout CDM1 without Lysine -0.1 N.D. N.D. -0.5 -1.6
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet +0.2 N.D. N.D. +0.3 -2.7
chicken chicken 1; day 2; diet=StandardDiet; sample=FecalPellet -0.0 N.D. N.D. +0.1 -2.1
nutrient dropout control CDM1 -0.3 N.D. N.D. -0.6 -1.2
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet +0.2 N.D. N.D. -0.5 -1.8
nutrient dropout CDM1 without Methionine -0.1 N.D. N.D. -0.2 -1.7
nutrient dropout CDM1 without Glutamine -0.3 N.D. N.D. -0.8 -0.8
nutrient dropout CDM1 without Glycine -0.2 N.D. N.D. -0.2 -1.5
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 +0.2 N.D. N.D. -0.8 -1.2
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos -1.3 N.D. N.D. +0.2 -0.6
nutrient dropout CDM1 without Isoleucine +0.1 N.D. N.D. -0.9 -0.8
stress Recovery broth with Nitrofurantoin 0.03 mM +0.0 N.D. N.D. +0.3 -1.8
chicken chicken 10; day 4; diet=StandardDiet; sample=FecalPellet +0.3 N.D. N.D. -0.6 -1.3
chicken chicken 10; day 5; diet=StandardDiet; sample=FecalPellet +0.5 N.D. N.D. -0.4 -1.6
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet +0.2 N.D. N.D. -0.4 -1.3
nutrient dropout control CDM1 +0.3 N.D. N.D. -0.4 -1.3
stress Recovery broth with Metronidazole 0.03 mM +0.1 N.D. N.D. +0.7 -2.1
nutrient dropout CDM1 without Valine +0.6 N.D. N.D. -0.6 -1.0
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos -1.3 N.D. N.D. +0.5 +0.1
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine +0.4 N.D. N.D. +0.8 -1.5
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3 -0.1 N.D. N.D. -1.0 +0.9
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum +0.7 N.D. N.D. +0.9 -1.7
stress Recovery broth with Ciprofloxacin 0.1 mM +0.6 N.D. N.D. -0.3 +1.0
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