Fitness for 5 genes in Bifidobacterium breve UCC2003

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BBR_RS15565	BBR_RS15570	BBR_RS15575	BBR_RS15580	BBR_RS15585
nutrient dropout	CDM1 without Leucine	-0.6	-4.3	N.D.	N.D.	-0.2
nutrient dropout	CDM1 without Leucine	+0.2	-3.5	N.D.	N.D.	-0.3
mouse	mouse 10; day 1; diet=PolysaccharideDeficient; sample=FecalPellet	-1.1	-0.8	N.D.	N.D.	+0.4
supernatant	CDM1Gut with 50% spent media from Escherichia fergusonnii TT2	+0.0	-1.9	N.D.	N.D.	+0.5
stress	Recovery broth with Gentamicin 0.4 mM	-0.5	-0.7	N.D.	N.D.	-0.1
nutrient dropout	CDM1 without Glutamine	-0.2	-0.3	N.D.	N.D.	-0.8
nutrient dropout	CDM1 without Proline	-0.4	-0.1	N.D.	N.D.	-0.7
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	-0.0	-1.3	N.D.	N.D.	+0.2
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	-0.2	-1.3	N.D.	N.D.	+0.5
nutrient dropout	CDM1 without LipoicAcid	-0.5	+0.3	N.D.	N.D.	-0.8
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3	+0.1	-0.1	N.D.	N.D.	-1.0
stress	Recovery broth with Nitrofurantoin 0.05 mM	-0.6	-0.4	N.D.	N.D.	+0.2
stress	Recovery broth with Levofloxacin 0.2 mM	-0.9	+0.5	N.D.	N.D.	-0.3
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5	+0.6	-0.4	N.D.	N.D.	-0.7
stress	Recovery broth with Ciprofloxacin 0.1 mM	-0.3	+0.6	N.D.	N.D.	-0.6
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5	+0.3	+0.2	N.D.	N.D.	-0.8
stress	Recovery broth with Ciprofloxacin 0.1 mM	-0.5	+0.6	N.D.	N.D.	-0.3
mouse preculture	cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	-0.0	-0.8	N.D.	N.D.	+0.6
mouse	mouse 11; day 1; diet=HighFatHighSugar; sample=FecalPellet	-0.8	+0.0	N.D.	N.D.	+0.5
chicken coculture	chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-0.6	-0.1	N.D.	N.D.	+0.7
nutrient dropout	CDM1 without Valine	+0.1	+0.6	N.D.	N.D.	-0.6
chicken	chicken 10; day 4; diet=StandardDiet; sample=FecalPellet	+0.5	+0.3	N.D.	N.D.	-0.6
stress	Recovery broth with Ticarcillin 4e-04 mM	+0.2	-0.5	N.D.	N.D.	+0.5
chicken	chicken 5; day 7; diet=StandardDiet; sample=FecalPellet	+0.6	+0.2	N.D.	N.D.	-0.4
mrs timecourse	MRS Time48hr	-0.4	+0.7	N.D.	N.D.	+0.4
chicken	chicken 21; day 7; diet=StandardDiet; sample=Cecum	-0.5	+0.7	N.D.	N.D.	+0.9
stress timecourse	MRS + kanamycin Time24hr	+0.3	+0.7	N.D.	N.D.	+0.2
mrs timecourse	MRS Time8hr	+0.5	+0.4	N.D.	N.D.	+0.2
stress timecourse	MRS + kanamycin Time8hr	+0.5	+0.6	N.D.	N.D.	+0.3
chicken	chicken 21; day 7; diet=StandardDiet; sample=Small_intestine	+0.4	+0.4	N.D.	N.D.	+0.8