Fitness for 5 genes in Bifidobacterium breve UCC2003

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BBR_RS15550	BBR_RS15555	BBR_RS15560	BBR_RS15565	BBR_RS15570
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse11; day1	+0.0	-1.6	-5.1	+0.1	-0.3
mouse preculture	cage3; mouse1; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	-0.3	+0.1	-6.8	+0.2	-0.0
mouse preculture	cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	+0.1	-0.5	-5.2	-0.0	-0.8
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	+0.5	-0.2	-4.5	-0.2	-1.3
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	+0.1	+0.1	-4.5	-0.0	-1.3
mouse preculture	cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	-0.1	+1.1	-6.5	+0.4	-0.2
mouse preculture	cage3; mouse3; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	-1.3	+0.8	-4.0	+0.2	-0.6
nutrient dropout	CDM1 without Leucine	+0.5	-0.9	+0.5	-0.6	-4.3
mouse preculture	cage3; mouse3; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	-0.1	+0.5	-4.9	-0.2	-0.1
nutrient dropout	CDM1 without Alanine	-0.7	+0.2	-4.4	+0.1	+0.1
stress	Recovery broth with Benzethonium chloride 0.1 mM	-2.8	-0.9	-0.6	-0.3	+0.1
nutrient dropout	CDM1 without Alanine	-0.8	+0.2	-3.7	-0.2	+0.1
mouse preculture	cage3; mouse1; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	+0.4	+0.3	-4.8	+0.1	-0.1
nutrient dropout	CDM1 without Phenylalanine	-5.7	+0.0	+1.1	+0.1	+0.2
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2	-0.4	-2.6	-1.3	+0.4	+0.1
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse13; day1	-2.3	-0.9	-0.8	+0.1	+0.4
nutrient dropout	CDM1 without Phenylalanine	-3.3	+0.3	+0.1	-0.4	-0.2
stress	Recovery broth with 3-Acetylpyridine 0.04 mM	-2.5	-1.5	+0.6	-0.2	+0.3
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2	+0.0	-0.5	-3.0	+0.1	+0.1
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse12; day4	-0.8	-0.4	-1.8	-0.5	+0.2
stress	Recovery broth with Ciprofloxacin 0.1 mM	-1.0	-1.6	-0.5	-0.3	+0.6
mouse	mouse 10; day 1; diet=PolysaccharideDeficient; sample=FecalPellet	-0.4	-1.6	+1.2	-1.1	-0.8
mouse	diet=StandardDiet; sample=FecalPellet; mouse5; day4	-2.0	-1.1	+0.5	+0.3	-0.1
mouse	mouse 12; day 1; diet=HighFatHighSugar; sample=FecalPellet	-1.6	+0.7	-1.5	+0.1	-0.0
nutrient dropout	CDM1 without Leucine	+0.1	+0.4	+0.7	+0.2	-3.5
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3	-0.5	+0.8	-2.2	+0.5	-0.3
stress	Recovery broth with Nitrofurantoin 0.05 mM	-1.5	+1.5	-0.2	-0.6	-0.4
stress	Recovery broth with Thioridazine 0.1 mM	+0.9	-2.7	+0.1	+0.4	+0.3
mouse preculture	cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	+0.7	+0.1	-2.3	+0.2	+0.5
carbon source	reconstituted MRS with Difucosyllactose 7.9 mM	+1.6	+1.0	+1.1	-0.4	-0.1