Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS15530 and BBR_RS15535 are separated by 158 nucleotidesBBR_RS15535 and BBR_RS15540 are separated by 150 nucleotidesBBR_RS15540 and BBR_RS15545 are separated by 63 nucleotidesBBR_RS15545 and BBR_RS15550 are separated by 91 nucleotides BBR_RS15530: BBR_RS15530 - DNA-binding protein WhiA, at 1,258,273 to 1,259,223 _RS15530 BBR_RS15535: BBR_RS15535 - phosphoglycerate kinase, at 1,259,382 to 1,260,587 _RS15535 BBR_RS15540: BBR_RS15540 - triose-phosphate isomerase, at 1,260,738 to 1,261,541 _RS15540 BBR_RS15545: BBR_RS15545 - preprotein translocase subunit SecG, at 1,261,605 to 1,261,853 _RS15545 BBR_RS15550: BBR_RS15550 - L-lactate dehydrogenase, at 1,261,945 to 1,262,895 _RS15550
Group Condition BBR_RS15530 BBR_RS15535 BBR_RS15540 BBR_RS15545 BBR_RS15550
nutrient dropout CDM1 without Phenylalanine N.D. N.D. N.D. N.D. -5.7
nutrient dropout CDM1 without Phenylalanine N.D. N.D. N.D. N.D. -3.3
stress Recovery broth with Benzethonium chloride 0.1 mM N.D. N.D. N.D. N.D. -2.8
stress Recovery broth with 3-Acetylpyridine 0.04 mM N.D. N.D. N.D. N.D. -2.5
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day1 N.D. N.D. N.D. N.D. -2.3
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 N.D. N.D. N.D. N.D. -2.0
mouse mouse 12; day 1; diet=HighFatHighSugar; sample=FecalPellet N.D. N.D. N.D. N.D. -1.6
nutrient dropout CDM1 without Uracil N.D. N.D. N.D. N.D. -1.6
stress Recovery broth with Nitrofurantoin 0.05 mM N.D. N.D. N.D. N.D. -1.5
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day2 N.D. N.D. N.D. N.D. -1.4
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day5 N.D. N.D. N.D. N.D. -1.3
mouse preculture cage3; mouse3; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. N.D. N.D. N.D. -1.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day3 N.D. N.D. N.D. N.D. -1.3
nutrient dropout CDM1 without Glycine N.D. N.D. N.D. N.D. -1.3
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. N.D. N.D. N.D. -1.2
mouse mouse 15; day 1; diet=HighFatHighSugar; sample=FecalPellet N.D. N.D. N.D. N.D. -1.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 N.D. N.D. N.D. N.D. -1.1
supernatant CDM1Gut with 50% spent media from Erysipelotrichaceae bacterium 6_1_45 N.D. N.D. N.D. N.D. +1.1
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day6 N.D. N.D. N.D. N.D. +1.1
supernatant CDM1Gut with 50% spent media from B. breve UCC2003 library N.D. N.D. N.D. N.D. +1.1
supernatant CDM1Gut with 50% spent media from Clostridium sp. CC40_001C N.D. N.D. N.D. N.D. +1.2
supernatant CDM1Gut with 50% spent media from Bacteroides stercoris CC31F N.D. N.D. N.D. N.D. +1.2
supernatant CDM1Gut with 50% spent media from Clostridium clostridioforme 2_1_49FAA N.D. N.D. N.D. N.D. +1.2
supernatant CDM1Gut with 50% spent media from Citrobacter freundii 4_7_47CFAA N.D. N.D. N.D. N.D. +1.2
supernatant CDM1Gut with 50% spent media from Varibaculum cambriense AB12_3 N.D. N.D. N.D. N.D. +1.2
supernatant CDM1Gut with 50% spent media from Bifidobacterium adolescentis L2-32 N.D. N.D. N.D. N.D. +1.2
supernatant CDM1Gut with 50% spent media from Clostridium innocuum 6_1_30 N.D. N.D. N.D. N.D. +1.2
supernatant CDM1Gut with 50% spent media from Acidaminococcus sp. D21 N.D. N.D. N.D. N.D. +1.3
supernatant CDM1Gut with 50% spent media from Streptococcus sp. CC87K N.D. N.D. N.D. N.D. +1.4
carbon source reconstituted MRS with Difucosyllactose 7.9 mM N.D. N.D. N.D. N.D. +1.6
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