Fitness for 5 genes in Bifidobacterium breve UCC2003

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BBR_RS15475	BBR_RS15480	BBR_RS15485	BBR_RS15490	BBR_RS15495
nutrient dropout	CDM1 without Histidine	-6.5	+0.3	-0.8	-0.2	-0.3
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	-5.6	+0.3	-0.7	-0.0	-0.5
nutrient dropout	CDM1 without Histidine	-4.9	+0.3	-0.9	-0.3	-0.2
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	-5.2	+0.3	+0.1	-0.1	+0.1
supernatant	CDM1Gut with 50% spent media from Escherichia fergusonnii TT2	+0.0	-1.3	+0.5	-0.7	-1.8
nutrient dropout	CDM1 without Proline	-0.7	+0.1	-1.0	-0.5	-0.8
nutrient dropout control	CDM1	-0.3	+0.2	-1.2	-0.8	-0.8
nutrient dropout	CDM1 without Arginine	-0.0	+0.3	-1.4	-0.5	-0.6
chicken	chicken 2; day 5; diet=StandardDiet; sample=FecalPellet	-1.1	-0.5	-0.7	+0.2	-0.1
nutrient dropout	CDM1 without Leucine	+0.2	+0.2	-1.9	-0.2	-0.5
supernatant	CDM1Gut with 50% spent media from Clostridium perfringens WAL-14572	-0.1	-1.7	+0.2	-0.6	-0.0
mouse	mouse 12; day 1; diet=HighFatHighSugar; sample=FecalPellet	-0.0	-0.0	-1.1	-1.6	+0.6
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2	-0.0	-0.2	-2.1	-0.3	+0.6
nutrient dropout	CDM1 without Methionine	-0.5	+0.4	-1.1	-0.6	-0.1
nutrient dropout	CDM1 without Adenine	-0.2	+0.7	-1.2	-0.3	-1.0
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6	+1.0	-0.3	-0.7	-0.8	-0.3
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6	+0.7	-0.2	-1.0	-0.8	+0.5
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6	+1.0	-0.3	+0.5	-1.0	+0.8
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5	+0.7	-0.6	-0.1	-0.2	+1.2
stress	Recovery broth with Benzethonium chloride 0.1 mM	+0.4	+0.2	-0.7	+0.7	+0.6
chicken	chicken 5; day 6; diet=StandardDiet; sample=FecalPellet	+0.0	-0.5	+1.0	+1.3	-0.0
stress	Recovery broth with Levofloxacin 0.2 mM	-0.2	-0.5	+0.8	+1.0	+0.8
chicken	chicken 10; day 5; diet=StandardDiet; sample=FecalPellet	+0.3	-0.4	+0.8	+1.3	-0.1
chicken	chicken 5; day 7; diet=StandardDiet; sample=FecalPellet	+0.2	-0.4	+0.7	+1.3	+0.2
chicken coculture	chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	+0.4	-0.4	+0.9	+1.3	-0.2
chicken coculture	chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	+0.6	-0.0	+1.2	+0.8	-0.3
mouse coculture	cage2; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482	+0.6	+0.1	+1.0	+0.8	+0.2
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse12; day4	-0.1	-0.4	+1.6	+3.8	+0.2
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse15; day3	-0.3	-0.1	+1.6	+3.9	+0.9
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3	+1.1	+0.1	+2.8	+5.9	-0.3