Fitness for 5 genes in Bifidobacterium breve UCC2003

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BBR_RS15400	BBR_RS15405	BBR_RS15410	BBR_RS15415	BBR_RS15420
nutrient dropout	CDM1 without Methionine	+0.1	-3.1	-3.1	+0.3	-0.4
chicken coculture	chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-0.1	-0.5	-1.9	-1.5	-0.7
nutrient dropout	CDM1 without Methionine	-0.3	-2.0	-2.0	+0.5	-0.2
chicken coculture	chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-1.3	+0.1	-0.2	-1.3	-0.6
chicken	chicken 2; day 6; diet=StandardDiet; sample=FecalPellet	+0.3	-1.3	-0.7	-0.7	-0.4
stress	Recovery broth with Ciprofloxacin 0.1 mM	-1.2	+0.1	-1.3	+0.3	-0.0
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse13; day3	-0.8	+0.1	-0.6	-0.9	+0.5
nutrient dropout	CDM1 without Phenylalanine	-0.1	-0.1	+0.3	+1.0	-2.1
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3	-0.8	+0.3	+0.6	-1.2	+0.0
nutrient dropout	CDM1 without Valine	+0.1	-1.4	+0.7	+0.8	-0.6
nutrient dropout	CDM1 without Valine	+0.3	-1.4	+0.6	+0.8	-0.5
mouse coculture	cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-0.1	-0.5	-0.8	+1.0	+0.6
mouse coculture	cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-0.0	-1.0	-0.7	+1.1	+0.8
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5	-0.5	-0.5	-0.4	+1.3	+0.5
mouse coculture	cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-0.1	-0.9	-0.2	+0.9	+0.8
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5	-0.7	-0.6	+0.3	+1.2	+0.4
mouse coculture	cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-0.1	-0.6	-0.5	+0.8	+0.9
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6	-1.0	+0.0	-0.0	+0.9	+0.7
mouse	diet=StandardDiet; sample=FecalPellet; mouse2; day4	-0.5	-0.4	+0.1	+1.0	+0.7
mouse	diet=StandardDiet; sample=FecalPellet; mouse3; day5	-0.3	-0.5	+0.4	+1.3	+0.2
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6	-0.5	-0.3	+0.5	+0.9	+0.6
mouse	diet=StandardDiet2; sample=FecalPellet; mouse16; day4	+0.5	-0.5	-0.5	+1.3	+0.6
carbon source	reconstituted MRS with Difucosyllactose 7.9 mM	+0.6	+0.3	+1.1	-0.3	+0.4
nutrient dropout	CDM1 without Adenine	-0.2	-0.3	+0.7	+1.2	+0.9
chicken	chicken 21; day 7; diet=StandardDiet; sample=Small_intestine	+0.6	+0.4	+1.1	-0.5	+0.9
nutrient dropout	CDM1 without Glycine	-0.8	-0.1	+0.8	+1.0	+1.9
mouse	mouse 10; day 1; diet=PolysaccharideDeficient; sample=FecalPellet	+0.4	+0.3	+0.0	+2.3	-0.0
chicken	chicken 21; day 7; diet=StandardDiet; sample=Cecum	+1.2	+0.5	+0.9	+0.0	+0.9
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	+0.2	+0.1	+4.1	+0.7	-0.7
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	+0.0	+0.4	+5.4	+0.2	-0.2