Fitness for 5 genes in Bifidobacterium breve UCC2003

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BBR_RS20895	BBR_RS15255	BBR_RS15260	BBR_RS15265	BBR_RS15270
chicken coculture	chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	N.D.	-3.7	-3.2	N.D.	-0.6
chicken coculture	chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	N.D.	-3.9	-4.0	N.D.	+0.5
chicken	chicken 2; day 6; diet=StandardDiet; sample=FecalPellet	N.D.	-3.4	-3.3	N.D.	+0.4
chicken coculture	chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	N.D.	-3.1	-3.5	N.D.	+0.3
chicken	chicken 2; day 5; diet=StandardDiet; sample=FecalPellet	N.D.	-3.3	-2.6	N.D.	+0.3
chicken	chicken 5; day 7; diet=StandardDiet; sample=FecalPellet	N.D.	-1.6	-1.8	N.D.	-0.4
mouse coculture	cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	N.D.	-1.7	-1.8	N.D.	-0.1
mouse coculture	cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	N.D.	-1.4	-2.0	N.D.	-0.2
mouse coculture	cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	N.D.	-1.2	-2.0	N.D.	-0.0
mouse coculture	cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	N.D.	-1.0	-1.5	N.D.	-0.2
mouse coculture	cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	N.D.	-1.3	-1.4	N.D.	+0.0
chicken	chicken 5; day 6; diet=StandardDiet; sample=FecalPellet	N.D.	-1.2	-1.2	N.D.	-0.2
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6	N.D.	-0.1	-0.9	N.D.	-1.5
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day4	N.D.	-0.2	-1.5	N.D.	-0.6
mouse coculture	cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	N.D.	-1.1	-1.1	N.D.	-0.1
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6	N.D.	-0.4	-1.3	N.D.	-0.3
chicken	chicken 9; day 2; diet=StandardDiet; sample=FecalPellet	N.D.	-1.1	-1.2	N.D.	+0.2
chicken	chicken 1; day 2; diet=StandardDiet; sample=FecalPellet	N.D.	-1.1	-1.1	N.D.	+0.1
mouse coculture	cage1; mouse3; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	N.D.	-0.9	-1.1	N.D.	+0.0
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	N.D.	-0.9	-0.7	N.D.	-0.2
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	N.D.	-1.0	-0.7	N.D.	-0.1
mouse coculture	cage1; mouse1; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	N.D.	-0.9	-1.0	N.D.	+0.1
mouse coculture	cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	N.D.	-0.8	-0.8	N.D.	-0.2
mouse coculture	cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	N.D.	-0.8	-0.9	N.D.	+0.1
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3	N.D.	+0.4	-1.3	N.D.	-0.6
supernatant	CDM1Gut with 50% spent media from Clostridium perfringens WAL-14572	N.D.	+0.6	+1.1	N.D.	-0.2
supernatant	CDM1Gut with 50% spent media from Collinsella sp. 4_8_47FAA	N.D.	+0.8	+1.0	N.D.	-0.1
supernatant	CDM1Gut with 50% spent media from Acidaminococcus sp. D21	N.D.	+0.8	+0.9	N.D.	+0.2
supernatant	CDM1Gut with 50% spent media from Acidaminococcus sp. HPA0509	N.D.	+0.9	+1.1	N.D.	+0.2
supernatant	CDM1Gut with 50% spent media from Clostridium sp. CC40_001C	N.D.	+0.8	+1.1	N.D.	+0.2