Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS15205 and BBR_RS15210 are separated by 223 nucleotidesBBR_RS15210 and BBR_RS15215 are separated by 198 nucleotidesBBR_RS15215 and BBR_RS15220 are separated by 297 nucleotidesBBR_RS15220 and BBR_RS15225 are separated by 250 nucleotides BBR_RS15205: BBR_RS15205 - 50S ribosomal protein L25, at 1,180,009 to 1,180,638 _RS15205 BBR_RS15210: BBR_RS15210 - branched-chain amino acid aminotransferase, at 1,180,862 to 1,181,989 _RS15210 BBR_RS15215: BBR_RS15215 - MazG-like protein, at 1,182,188 to 1,183,069 _RS15215 BBR_RS15220: BBR_RS15220 - trimeric intracellular cation channel family protein, at 1,183,367 to 1,184,137 _RS15220 BBR_RS15225: BBR_RS15225 - 30S ribosomal protein S20, at 1,184,388 to 1,184,648 _RS15225
Group Condition BBR_RS15205 BBR_RS15210 BBR_RS15215 BBR_RS15220 BBR_RS15225
nutrient dropout CDM1 without Valine N.D. -5.7 +0.1 -0.3 N.D.
nutrient dropout CDM1 without Valine N.D. -5.2 +0.3 -0.4 N.D.
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos N.D. -4.8 +0.1 -0.2 N.D.
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos N.D. -4.4 -0.2 -0.2 N.D.
nutrient dropout CDM1 without Isoleucine N.D. -3.3 -0.1 +0.1 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day3 N.D. -1.7 -0.2 -1.4 N.D.
nutrient dropout CDM1 without Leucine N.D. -3.3 +0.0 +0.3 N.D.
nutrient dropout CDM1 without Isoleucine N.D. -2.5 -0.2 -0.2 N.D.
nutrient dropout CDM1 without Leucine N.D. -2.9 +0.2 -0.1 N.D.
mouse coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -2.9 +0.0 +0.3 N.D.
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -2.6 -0.2 +0.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 N.D. -2.2 -0.4 +0.4 N.D.
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. -0.7 -0.6 -0.9 N.D.
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet N.D. -2.7 +0.5 +0.1 N.D.
stress Recovery broth with Bicyclomycin 0.05 mM N.D. -2.1 -0.1 +0.1 N.D.
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. -3.4 +0.7 +0.6 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse15; day3 N.D. -0.5 +0.3 -1.7 N.D.
mouse coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -2.2 +0.1 +0.4 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2 N.D. -1.1 +0.7 -1.2 N.D.
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. -2.1 -0.3 +0.8 N.D.
mouse coculture cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -2.0 +0.1 +0.4 N.D.
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. -2.2 +0.2 +0.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 N.D. -1.8 +0.3 +0.7 N.D.
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet N.D. -1.7 +0.5 +0.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 N.D. -1.6 +0.3 +0.5 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day4 N.D. -1.5 +0.1 +0.6 N.D.
stress Recovery broth with Nitrofurantoin 0.05 mM N.D. -1.3 +0.2 +0.9 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 N.D. -1.5 +0.6 +0.7 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 N.D. -1.4 +0.6 +0.6 N.D.
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet N.D. -1.3 +0.8 +0.5 N.D.
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