Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS15095 and BBR_RS15100 are separated by 160 nucleotidesBBR_RS15100 and BBR_RS15105 are separated by 178 nucleotidesBBR_RS15105 and BBR_RS15110 are separated by 5 nucleotidesBBR_RS15110 and BBR_RS15115 are separated by 26 nucleotides BBR_RS15095: BBR_RS15095 - CTP synthase, at 1,154,882 to 1,156,546 _RS15095 BBR_RS15100: BBR_RS15100 - murein L,D-transpeptidase, at 1,156,707 to 1,158,335 _RS15100 BBR_RS15105: BBR_RS15105 - Fe-S cluster assembly protein SufB, at 1,158,514 to 1,160,013 _RS15105 BBR_RS15110: BBR_RS15110 - Fe-S cluster assembly protein SufD, at 1,160,019 to 1,161,254 _RS15110 BBR_RS15115: BBR_RS15115 - Fe-S cluster assembly ATPase SufC, at 1,161,281 to 1,162,060 _RS15115
Group Condition BBR_RS15095 BBR_RS15100 BBR_RS15105 BBR_RS15110 BBR_RS15115
chicken chicken 3; day 3; diet=StandardDiet; sample=FecalPellet N.D. -2.0 N.D. N.D. N.D.
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum N.D. -1.9 N.D. N.D. N.D.
chicken chicken 3; day 2; diet=StandardDiet; sample=FecalPellet N.D. -1.7 N.D. N.D. N.D.
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine N.D. -1.6 N.D. N.D. N.D.
chicken chicken 10; day 4; diet=StandardDiet; sample=FecalPellet N.D. -1.4 N.D. N.D. N.D.
chicken chicken 10; day 5; diet=StandardDiet; sample=FecalPellet N.D. -1.4 N.D. N.D. N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 N.D. -1.1 N.D. N.D. N.D.
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet N.D. -1.1 N.D. N.D. N.D.
nutrient dropout CDM1 without Arginine N.D. +1.0 N.D. N.D. N.D.
nutrient dropout CDM1 without Cytosine N.D. +1.0 N.D. N.D. N.D.
nutrient dropout control CDM1 N.D. +1.0 N.D. N.D. N.D.
nutrient dropout control CDM1 N.D. +1.0 N.D. N.D. N.D.
nutrient dropout CDM1 without Thiamine N.D. +1.0 N.D. N.D. N.D.
nutrient dropout CDM1 without Pantothenate N.D. +1.0 N.D. N.D. N.D.
nutrient dropout CDM1 without Adenine N.D. +1.1 N.D. N.D. N.D.
nutrient dropout CDM1 without LipoicAcid N.D. +1.1 N.D. N.D. N.D.
nutrient dropout control CDM1 N.D. +1.1 N.D. N.D. N.D.
nutrient dropout CDM1 without Pantothenate N.D. +1.1 N.D. N.D. N.D.
nutrient dropout CDM1 without Proline N.D. +1.1 N.D. N.D. N.D.
nutrient dropout CDM1 without Alanine N.D. +1.1 N.D. N.D. N.D.
nutrient dropout CDM1 without Cyanocobalamin N.D. +1.1 N.D. N.D. N.D.
nutrient dropout CDM1 without Arginine N.D. +1.2 N.D. N.D. N.D.
nutrient dropout CDM1 without Isoleucine N.D. +1.2 N.D. N.D. N.D.
nutrient dropout CDM1 without FolicAcid N.D. +1.2 N.D. N.D. N.D.
nutrient dropout CDM1 without Aspartate N.D. +1.2 N.D. N.D. N.D.
nutrient dropout CDM1 without Glycine N.D. +1.2 N.D. N.D. N.D.
nutrient dropout CDM1 without Proline N.D. +1.3 N.D. N.D. N.D.
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. +1.3 N.D. N.D. N.D.
nutrient dropout CDM1 without Phenylalanine N.D. +1.5 N.D. N.D. N.D.
nutrient dropout CDM1 without Phenylalanine N.D. +1.8 N.D. N.D. N.D.
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