Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS15050 and BBR_RS15055 overlap by 1 nucleotidesBBR_RS15055 and BBR_RS15060 are separated by 95 nucleotidesBBR_RS15060 and BBR_RS15065 are separated by 8 nucleotidesBBR_RS15065 and BBR_RS15070 are separated by 12 nucleotides BBR_RS15050: BBR_RS15050 - DUF948 domain-containing protein, at 1,145,623 to 1,146,027 _RS15050 BBR_RS15055: BBR_RS15055 - hypothetical protein, at 1,146,027 to 1,146,263 _RS15055 BBR_RS15060: BBR_RS15060 - alanine--tRNA ligase, at 1,146,359 to 1,149,037 _RS15060 BBR_RS15065: BBR_RS15065 - Holliday junction resolvase RuvX, at 1,149,046 to 1,149,498 _RS15065 BBR_RS15070: BBR_RS15070 - endolytic transglycosylase MltG, at 1,149,511 to 1,150,698 _RS15070
Group Condition BBR_RS15050 BBR_RS15055 BBR_RS15060 BBR_RS15065 BBR_RS15070
mouse coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -7.1 -5.1 N.D. N.D. -8.1
mouse coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -7.1 -5.1 N.D. N.D. -8.1
mouse coculture cage1; mouse3; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -7.9 -4.7 N.D. N.D. -7.6
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -6.5 -4.6 N.D. N.D. -7.5
mouse coculture cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -5.3 -5.1 N.D. N.D. -8.0
mouse coculture cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -5.8 -5.6 N.D. N.D. -6.9
mouse preculture cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -6.4 -4.9 N.D. N.D. -7.0
mouse coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -6.5 -4.6 N.D. N.D. -6.7
mouse coculture cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -3.5 -5.7 N.D. N.D. -8.6
mouse coculture cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -3.4 -5.4 N.D. N.D. -8.2
mouse preculture cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -6.0 -4.6 N.D. N.D. -5.8
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day2 -6.8 -5.1 N.D. N.D. -3.9
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day2 -5.3 -3.3 N.D. N.D. -7.0
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2 -5.2 -3.2 N.D. N.D. -6.8
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 -6.2 -4.5 N.D. N.D. -4.5
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day2 -5.2 -3.2 N.D. N.D. -6.8
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day1 -5.2 -3.2 N.D. N.D. -6.8
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day3 -6.1 -4.5 N.D. N.D. -4.5
mouse coculture cage2; mouse2; day2; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482 -5.8 -3.9 N.D. N.D. -5.0
mouse coculture cage1; mouse1; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -1.7 -5.9 N.D. N.D. -7.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day4 -5.9 -4.2 N.D. N.D. -4.3
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day3 -4.9 -2.8 N.D. N.D. -6.6
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 -4.9 -2.8 N.D. N.D. -6.6
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day2 -4.9 -2.8 N.D. N.D. -6.6
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day3 -4.9 -2.8 N.D. N.D. -6.5
mouse preculture cage3; mouse1; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -2.7 -5.9 N.D. N.D. -5.6
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 -4.8 -2.8 N.D. N.D. -6.5
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day4 -5.8 -4.1 N.D. N.D. -4.2
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 -4.8 -2.7 N.D. N.D. -6.5
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day2 -4.0 -5.0 N.D. N.D. -5.0
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