Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS14815 and BBR_RS14820 are separated by 252 nucleotidesBBR_RS14820 and BBR_RS14825 are separated by 89 nucleotidesBBR_RS14825 and BBR_RS14830 are separated by 122 nucleotidesBBR_RS14830 and BBR_RS14835 are separated by 48 nucleotides BBR_RS14815: BBR_RS14815 - D-hexose-6-phosphate mutarotase, at 1,098,550 to 1,099,389 _RS14815 BBR_RS14820: BBR_RS14820 - MFS transporter, at 1,099,642 to 1,101,069 _RS14820 BBR_RS14825: BBR_RS14825 - DUF4976 domain-containing protein, at 1,101,159 to 1,102,685 _RS14825 BBR_RS14830: BBR_RS14830 - anaerobic sulfatase maturase, at 1,102,808 to 1,104,151 _RS14830 BBR_RS14835: BBR_RS14835 - sulfite exporter TauE/SafE family protein, at 1,104,200 to 1,105,000 _RS14835
Group Condition BBR_RS14815 BBR_RS14820 BBR_RS14825 BBR_RS14830 BBR_RS14835
stress timecourse MRS + carbenicillin Time48hr +0.4 -0.4 -0.4 -0.9 -0.1
stress Recovery broth with Benzethonium chloride 0.1 mM -0.9 -0.0 +0.1 +0.5 -0.5
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 +0.4 -0.7 +0.6 -0.0 -0.6
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs +0.4 +0.4 +0.3 -0.5 -0.7
nutrient dropout CDM1 without Proline -0.8 +0.5 +0.2 +0.3 -0.2
nutrient dropout CDM1 without Phenylalanine -0.4 +0.3 +0.2 +0.7 -0.7
nutrient dropout CDM1 without Arginine -0.8 -0.1 +0.2 +0.5 +0.4
stress Recovery broth with Ciprofloxacin 0.1 mM -0.1 +0.3 +0.3 +0.7 -0.8
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.7 +0.2 -0.8 -0.0 +0.3
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.5 +0.4 -0.6 +0.3 -0.2
carbon source reconstituted MRS with Difucosyllactose 7.9 mM +0.3 +0.5 -0.1 +0.5 -0.7
nutrient dropout CDM1 without Adenine -0.6 +0.1 +0.2 +0.7 +0.2
nutrient dropout CDM1 without Cyanocobalamin -0.8 +0.3 +0.3 +0.5 +0.3
stress Recovery broth with Levofloxacin 0.2 mM +0.3 +0.6 -0.1 +0.4 -0.6
nutrient dropout CDM1 without Thiamine -0.6 +0.2 +0.4 +0.5 +0.2
nutrient dropout CDM1 without Isoleucine -0.5 +0.4 +0.2 +0.4 +0.3
nutrient dropout control CDM1 -0.5 +0.3 +0.5 +0.5 +0.2
nutrient dropout CDM1 without Glycine -0.6 +0.6 +0.3 +0.6 +0.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day4 +0.7 +0.1 +0.5 +0.4 -0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day5 +0.3 -0.4 +0.8 +0.2 +0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day5 +0.7 +0.3 +0.5 +0.3 -0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day5 +0.7 +0.2 +0.5 +0.3 -0.0
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 +0.8 +0.5 +0.1 +0.3 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 +0.8 +0.1 +0.3 +0.4 +0.2
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 +0.6 +0.4 +0.3 +0.3 +0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day5 +0.3 +0.0 +0.4 +0.5 +0.7
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 +0.6 +0.5 +0.6 +0.6 -0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 +0.7 +0.2 +0.4 +0.5 +0.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day4 +0.6 +0.2 +0.5 +0.2 +0.5
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 +0.8 +0.7 +0.6 +0.4 +0.4
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