Fitness for 5 genes in Bifidobacterium breve UCC2003

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BBR_RS14740	BBR_RS20855	BBR_RS14745	BBR_RS14750	BBR_RS14755
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6	-1.8	-2.9	+0.0	-0.6	+0.3
nutrient dropout	CDM1 without Adenine	-0.2	-1.7	-0.4	-0.5	-1.3
nutrient dropout	CDM1 without Cytosine	+0.0	-1.6	-0.4	-0.9	-0.5
nutrient dropout	CDM1 without Proline	+0.2	-1.5	-0.4	-0.8	-0.8
stress	Recovery broth with Benzethonium chloride 0.1 mM	+1.0	-3.7	-0.4	-0.0	-0.1
mouse	diet=StandardDiet; sample=FecalPellet; mouse5; day5	-0.4	-3.0	+0.1	-0.2	+0.2
mouse	diet=StandardDiet; sample=FecalPellet; mouse5; day4	-0.2	-2.6	+0.0	-0.3	-0.0
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day2	-1.4	-1.1	+0.1	-0.0	-0.5
nutrient dropout	CDM1 without Isoleucine	-0.4	-0.6	-0.1	-0.9	-0.9
nutrient dropout	CDM1 without Arginine	+0.1	-1.4	-0.4	-0.5	-0.6
nutrient dropout control	CDM1	-0.6	-0.8	-0.1	-0.6	-0.7
nutrient dropout	CDM1 without Threonine	-0.1	-1.4	-0.2	-0.7	-0.3
mouse	diet=StandardDiet; sample=FecalPellet; mouse3; day4	-2.2	-0.7	+0.1	-0.1	+0.3
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6	-1.0	-1.3	-0.0	-0.5	+0.4
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse13; day3	+0.1	-2.0	+0.2	-0.2	-0.5
mouse	diet=StandardDiet; sample=FecalPellet; mouse5; day6	-2.8	-0.3	+0.2	+0.6	+0.0
mouse	diet=StandardDiet2; sample=FecalPellet; mouse16; day3	-0.2	-2.4	+0.1	+0.2	+0.4
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2	-1.5	-1.0	+0.2	+0.3	+0.2
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5	-0.6	-1.4	-0.2	-0.1	+0.6
mouse coculture	cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-0.4	-1.6	+0.1	+0.0	+0.8
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day3	-0.8	-0.7	+0.1	-0.2	+0.8
stress	Recovery broth with Gentamicin 0.4 mM	+0.3	-1.6	-0.2	+0.2	+0.5
stress	Recovery broth with Ciprofloxacin 0.1 mM	-1.0	+0.9	+0.3	+0.2	-1.2
mouse preculture	cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	-0.5	+1.0	+0.0	-0.2	-1.0
nutrient dropout	CDM1 without Glycine	+1.1	+0.2	-0.3	-0.6	-0.7
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day4	-0.6	+0.2	+0.2	-0.9	+0.8
chicken	chicken 2; day 6; diet=StandardDiet; sample=FecalPellet	+0.7	+0.7	+0.3	-0.2	-0.7
nutrient dropout	CDM1 without Phenylalanine	+1.3	-0.3	+0.5	-1.0	+0.7
stress	Recovery broth with Levofloxacin 0.2 mM	+0.1	+1.5	-0.1	-0.2	+0.8
mouse	mouse 10; day 1; diet=PolysaccharideDeficient; sample=FecalPellet	+1.3	+0.9	+0.3	+0.8	+0.4