Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS14735 and BBR_RS20850 overlap by 9 nucleotidesBBR_RS20850 and BBR_RS14740 are separated by 179 nucleotidesBBR_RS14740 and BBR_RS20855 are separated by 278 nucleotidesBBR_RS20855 and BBR_RS14745 are separated by 45 nucleotides BBR_RS14735: BBR_RS14735 - TetR family transcriptional regulator, at 1,080,202 to 1,080,689 _RS14735 BBR_RS20850: BBR_RS20850 - resolvase, at 1,080,681 to 1,080,923 _RS20850 BBR_RS14740: BBR_RS14740 - YccF domain-containing protein, at 1,081,103 to 1,081,468 _RS14740 BBR_RS20855: BBR_RS20855 - hypothetical protein, at 1,081,747 to 1,082,028 _RS20855 BBR_RS14745: BBR_RS14745 - MFS transporter, at 1,082,074 to 1,084,125 _RS14745
Group Condition BBR_RS14735 BBR_RS20850 BBR_RS14740 BBR_RS20855 BBR_RS14745
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day2 -0.1 -5.5 -0.2 -1.9 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day5 -0.9 -3.3 -0.4 -3.0 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day6 -0.9 -3.3 -2.8 -0.3 +0.2
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 -0.5 -3.8 -0.2 -2.6 +0.0
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2 +0.4 -4.5 -1.5 -1.0 +0.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 -0.5 -3.5 -0.6 -1.4 -0.2
mouse preculture cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -0.4 -4.9 +0.3 -0.8 -0.2
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 -0.3 -3.9 -1.6 +0.1 -0.1
stress Recovery broth with 3-Acetylpyridine 0.04 mM -1.4 -3.3 -0.4 -0.5 +0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day1 +0.2 -5.5 +0.1 -0.2 -0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 -0.4 -3.6 -0.3 -1.0 +0.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day4 -0.9 -3.9 -0.6 +0.2 +0.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day2 -0.3 -4.0 +0.4 -1.1 +0.0
nutrient dropout CDM1 without Phenylalanine -0.1 -3.7 -0.4 -0.5 -0.2
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2 +0.4 -5.4 +0.1 -0.2 +0.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 -0.4 -3.5 -1.2 +0.2 +0.1
mouse mouse 12; day 1; diet=HighFatHighSugar; sample=FecalPellet -0.5 -4.8 +0.6 +0.2 -0.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 -0.6 +0.8 -1.8 -2.9 +0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day1 -0.8 -4.3 +0.4 +0.0 +0.3
mouse preculture cage3; mouse3; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs +0.2 -5.1 +0.2 +0.1 +0.3
carbon source reconstituted MRS with Difucosyllactose 7.9 mM -0.5 -3.8 -0.1 +0.1 +0.3
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day3 +0.5 -2.3 +0.1 -2.0 +0.2
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2 +0.5 -4.1 +0.9 +0.0 -0.4
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -0.0 -4.9 +0.4 +1.0 +0.5
stress Recovery broth with Streptomycin 0.3 mM -0.6 -3.2 -0.1 +1.2 -0.0
stress Recovery broth with Benzethonium chloride 0.1 mM +0.1 +0.9 +1.0 -3.7 -0.4
stress Recovery broth with Ciprofloxacin 0.1 mM +0.7 -2.6 -1.0 +0.9 +0.3
nutrient dropout CDM1 without Phenylalanine +0.5 -3.5 +1.3 -0.3 +0.5
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 -1.0 +2.0 -1.0 -1.3 -0.0
mouse mouse 10; day 1; diet=PolysaccharideDeficient; sample=FecalPellet -0.7 +1.6 +1.3 +0.9 +0.3
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BBR_RS14735
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