Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS14530 and BBR_RS14535 are separated by 106 nucleotidesBBR_RS14535 and BBR_RS14540 are separated by 80 nucleotidesBBR_RS14540 and BBR_RS14545 are separated by 38 nucleotidesBBR_RS14545 and BBR_RS14550 are separated by 39 nucleotides BBR_RS14530: BBR_RS14530 - tRNA-Arg, at 1,033,114 to 1,033,190 _RS14530 BBR_RS14535: BBR_RS14535 - pyridoxal phosphate-dependent aminotransferase, at 1,033,297 to 1,034,502 _RS14535 BBR_RS14540: BBR_RS14540 - Na+/H+ antiporter NhaA, at 1,034,583 to 1,035,971 _RS14540 BBR_RS14545: BBR_RS14545 - TIGR00730 family Rossman fold protein, at 1,036,010 to 1,036,912 _RS14545 BBR_RS14550: BBR_RS14550 - hypothetical protein, at 1,036,952 to 1,037,617 _RS14550
Group Condition BBR_RS14530 BBR_RS14535 BBR_RS14540 BBR_RS14545 BBR_RS14550
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet N.D. -0.2 -4.7 -0.4 -4.2
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet N.D. -0.6 -4.9 +0.0 -3.9
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet N.D. +0.2 -4.9 -0.3 -4.0
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine N.D. +0.2 -3.9 -0.2 -5.0
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 N.D. +0.2 -5.1 -0.4 -3.2
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 N.D. -0.3 -5.6 +0.4 -2.5
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. +0.5 -4.1 -1.4 -3.1
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day3 N.D. +0.3 -5.6 -0.9 -1.9
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum N.D. -0.0 -2.9 -0.6 -4.5
chicken chicken 10; day 5; diet=StandardDiet; sample=FecalPellet N.D. +0.0 -3.4 -0.9 -3.5
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 N.D. +0.4 -5.3 -0.3 -2.7
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day4 N.D. +0.1 -5.5 -0.1 -2.1
mouse coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. +0.1 -5.5 -0.2 -1.8
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse15; day2 N.D. +0.1 -6.2 -1.0 -0.2
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. +0.0 -4.5 -0.3 -2.4
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day1 N.D. +0.2 -6.2 -0.2 -1.0
chicken chicken 10; day 4; diet=StandardDiet; sample=FecalPellet N.D. -0.0 -3.1 -0.1 -3.9
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet N.D. -0.9 -3.3 +0.7 -3.6
chicken chicken 3; day 3; diet=StandardDiet; sample=FecalPellet N.D. -0.3 -2.6 -0.1 -4.0
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 N.D. -0.1 -1.5 -1.9 -3.4
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day2 N.D. +0.0 -6.4 -0.4 -0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day4 N.D. -1.1 -2.5 -0.2 -3.0
mouse coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. +0.1 -4.6 +0.2 -2.4
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day2 N.D. +0.4 -5.7 -0.5 -0.9
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 N.D. +0.3 -4.7 -0.3 -1.8
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 N.D. +0.1 -4.2 -0.7 -1.8
stress Recovery broth with Carbenicillin 0.001 mM N.D. +0.4 -3.1 -0.2 -3.5
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 N.D. +0.5 -5.7 -0.5 -0.5
mouse coculture cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. +0.2 -5.6 +0.1 -0.9
nutrient dropout CDM1 without Glycine N.D. -5.1 -0.6 +0.5 -0.7
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