Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS14435 and BBR_RS14440 are separated by 47 nucleotidesBBR_RS14440 and BBR_RS14445 are separated by 248 nucleotidesBBR_RS14445 and BBR_RS14450 are separated by 168 nucleotidesBBR_RS14450 and BBR_RS14455 overlap by 4 nucleotides BBR_RS14435: BBR_RS14435 - tRNA-Ala, at 1,013,224 to 1,013,299 _RS14435 BBR_RS14440: BBR_RS14440 - Cof-type HAD-IIB family hydrolase, at 1,013,347 to 1,014,156 _RS14440 BBR_RS14445: BBR_RS14445 - Solute-binding protein of ABC transporter system, at 1,014,405 to 1,015,385 _RS14445 BBR_RS14450: BBR_RS14450 - methionine ABC transporter ATP-binding protein, at 1,015,554 to 1,016,756 _RS14450 BBR_RS14455: BBR_RS14455 - ABC transporter permease, at 1,016,753 to 1,017,439 _RS14455
Group Condition BBR_RS14435 BBR_RS14440 BBR_RS14445 BBR_RS14450 BBR_RS14455
stress Recovery broth with Trimethoprim 0.01 mM N.D. +0.2 -0.8 -0.8 -1.0
carbon source reconstituted MRS with Inulin 0.8 mM N.D. -1.7 +0.2 +0.0 +0.0
nutrient dropout CDM1 without Glycine N.D. -1.7 +0.3 +0.0 -0.1
carbon source reconstituted MRS with Sucrose 29 mM N.D. -1.5 -0.0 +0.1 +0.0
nutrient dropout CDM1 without Methionine N.D. +0.7 -0.6 -0.7 -0.8
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day6 N.D. -0.7 +0.1 -0.8 +0.4
nutrient dropout CDM1 without Methionine N.D. +0.5 -0.6 -0.4 -0.5
carbon source reconstituted MRS with Difucosyllactose 7.9 mM N.D. -1.0 +0.1 -0.2 +0.5
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3 N.D. +0.5 -0.3 -0.2 -0.7
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 N.D. +0.4 -0.2 -0.9 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day5 N.D. +0.4 -0.4 -0.8 +0.5
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. +1.3 -0.7 -0.3 -0.6
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. +1.2 +0.3 -0.3 -0.8
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 N.D. +0.7 -0.2 -0.4 +0.4
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 N.D. +0.4 +0.3 -0.6 +0.5
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day3 N.D. +0.6 -0.5 -0.0 +0.6
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. +1.0 +0.7 -0.6 -0.0
mrs timecourse MRS Time8hr N.D. -0.2 +0.6 -0.1 +0.8
stress timecourse MRS + kanamycin Time9hr N.D. +0.5 +0.5 -0.2 +0.5
stress timecourse MRS + kanamycin Time24hr N.D. +0.2 +0.9 -0.1 +0.5
chicken chicken 10; day 5; diet=StandardDiet; sample=FecalPellet N.D. +0.6 +0.3 +0.6 +0.4
mrs timecourse MRS Time48hr N.D. +0.3 +0.7 +0.3 +0.6
chicken chicken 3; day 2; diet=StandardDiet; sample=FecalPellet N.D. +0.7 +0.6 +0.6 +0.1
nutrient dropout CDM1 without Cysteine N.D. -0.4 +0.5 +0.8 +1.2
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet N.D. +0.8 +0.4 +0.8 +0.3
chicken chicken 10; day 4; diet=StandardDiet; sample=FecalPellet N.D. +0.7 +0.4 +0.5 +0.7
chicken chicken 3; day 3; diet=StandardDiet; sample=FecalPellet N.D. +0.7 +0.6 +0.7 +0.4
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet N.D. +0.7 +0.6 +0.8 +0.6
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine N.D. +0.5 +0.8 +1.5 +1.6
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum N.D. +0.9 +0.7 +1.5 +1.4
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