Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS14415 and BBR_RS14420 are separated by 3 nucleotidesBBR_RS14420 and BBR_RS14425 overlap by 4 nucleotidesBBR_RS14425 and BBR_RS14430 are separated by 127 nucleotidesBBR_RS14430 and BBR_RS14435 are separated by 83 nucleotides BBR_RS14415: BBR_RS14415 - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 1,010,467 to 1,011,849 _RS14415 BBR_RS14420: BBR_RS14420 - ribosome silencing factor, at 1,011,853 to 1,012,239 _RS14420 BBR_RS14425: BBR_RS14425 - histidine phosphatase family protein, at 1,012,236 to 1,012,937 _RS14425 BBR_RS14430: BBR_RS14430 - tRNA-Ala, at 1,013,065 to 1,013,140 _RS14430 BBR_RS14435: BBR_RS14435 - tRNA-Ala, at 1,013,224 to 1,013,299 _RS14435
Group Condition BBR_RS14415 BBR_RS14420 BBR_RS14425 BBR_RS14430 BBR_RS14435
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day6 N.D. -2.5 -0.2 N.D. N.D.
mouse preculture cage3; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. -2.4 -0.1 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 N.D. -1.8 +0.3 N.D. N.D.
nutrient dropout CDM1 without Glutathione N.D. -1.2 -0.2 N.D. N.D.
nutrient dropout CDM1 without Uracil N.D. -1.1 -0.2 N.D. N.D.
nutrient dropout CDM1 without Asparagine N.D. -1.4 +0.1 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 N.D. -1.3 +0.1 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day2 N.D. -1.2 +0.1 N.D. N.D.
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. -1.2 +0.1 N.D. N.D.
stress Recovery broth with Levofloxacin 0.2 mM N.D. -1.2 +0.3 N.D. N.D.
stress Recovery broth with Benzethonium chloride 0.1 mM N.D. -1.4 +0.5 N.D. N.D.
nutrient dropout CDM1 without Histidine N.D. -1.1 +0.4 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day5 N.D. -0.9 +0.4 N.D. N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2 N.D. -0.9 +0.4 N.D. N.D.
stress Recovery broth with Ciprofloxacin 0.1 mM N.D. -0.8 +0.5 N.D. N.D.
supernatant CDM1Gut with 50% spent media from Escherichia fergusonnii TT2 N.D. +0.8 -0.7 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 N.D. -0.5 +0.8 N.D. N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day3 N.D. +0.8 -0.6 N.D. N.D.
stress timecourse MRS + carbenicillin Time3hr N.D. +1.1 -0.3 N.D. N.D.
stress timecourse MRS + kanamycin Time48hr N.D. +1.1 -0.2 N.D. N.D.
mrs timecourse MRS Time24hr N.D. +1.2 -0.2 N.D. N.D.
stress timecourse MRS + carbenicillin Time48hr N.D. +1.3 +0.0 N.D. N.D.
mouse coculture cage2; mouse2; day2; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. +1.1 +0.2 N.D. N.D.
stress timecourse MRS + carbenicillin Time24hr N.D. +1.1 +0.2 N.D. N.D.
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. +1.0 +0.4 N.D. N.D.
mrs timecourse MRS Time48hr N.D. +1.3 +0.0 N.D. N.D.
stress timecourse MRS + carbenicillin Time9hr N.D. +1.3 +0.0 N.D. N.D.
stress Recovery broth with Thioridazine 0.1 mM N.D. +0.8 +0.5 N.D. N.D.
stress Recovery broth with 3-Acetylpyridine 0.04 mM N.D. +0.9 +0.5 N.D. N.D.
stress timecourse MRS + carbenicillin Time7hr N.D. +1.3 +0.1 N.D. N.D.
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