Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS14405 and BBR_RS20830 are separated by 37 nucleotidesBBR_RS20830 and BBR_RS14410 are separated by 173 nucleotidesBBR_RS14410 and BBR_RS14415 are separated by 183 nucleotidesBBR_RS14415 and BBR_RS14420 are separated by 3 nucleotides BBR_RS14405: BBR_RS14405 - glutamine-hydrolyzing GMP synthase, at 1,005,796 to 1,007,358 _RS14405 BBR_RS20830: BBR_RS20830 - hypothetical protein, at 1,007,396 to 1,007,632 _RS20830 BBR_RS14410: BBR_RS14410 - phosphoketolase, at 1,007,806 to 1,010,283 _RS14410 BBR_RS14415: BBR_RS14415 - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 1,010,467 to 1,011,849 _RS14415 BBR_RS14420: BBR_RS14420 - ribosome silencing factor, at 1,011,853 to 1,012,239 _RS14420
Group Condition BBR_RS14405 BBR_RS20830 BBR_RS14410 BBR_RS14415 BBR_RS14420
stress Recovery broth with Benzethonium chloride 0.1 mM N.D. -5.7 N.D. N.D. -1.4
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day1 N.D. -6.6 N.D. N.D. -0.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day4 N.D. -6.1 N.D. N.D. -0.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day2 N.D. -5.1 N.D. N.D. -0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 N.D. -2.1 N.D. N.D. -1.8
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day5 N.D. -3.4 N.D. N.D. -0.5
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day6 N.D. -1.3 N.D. N.D. -2.5
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 N.D. -3.5 N.D. N.D. -0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 N.D. -3.6 N.D. N.D. -0.1
mouse mouse 12; day 1; diet=HighFatHighSugar; sample=FecalPellet N.D. -2.7 N.D. N.D. -0.8
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3 N.D. -4.0 N.D. N.D. +0.7
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day2 N.D. -2.6 N.D. N.D. -0.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 N.D. -1.7 N.D. N.D. -1.3
nutrient dropout CDM1 without Asparagine N.D. -1.3 N.D. N.D. -1.4
mouse preculture cage3; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. -0.3 N.D. N.D. -2.4
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day2 N.D. -1.5 N.D. N.D. -1.2
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 N.D. -2.8 N.D. N.D. +0.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 N.D. -2.5 N.D. N.D. -0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 N.D. -1.8 N.D. N.D. -0.7
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day3 N.D. -3.1 N.D. N.D. +0.8
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day3 N.D. -1.6 N.D. N.D. -0.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day3 N.D. -1.9 N.D. N.D. -0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day2 N.D. -2.6 N.D. N.D. +0.6
stress Recovery broth with 3-Acetylpyridine 0.04 mM N.D. -2.9 N.D. N.D. +0.9
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. -2.0 N.D. N.D. +1.0
stress timecourse MRS + kanamycin Time5hr N.D. -1.3 N.D. N.D. +1.0
stress timecourse MRS + kanamycin Time48hr N.D. -1.3 N.D. N.D. +1.1
mrs timecourse MRS Time6hr N.D. -1.0 N.D. N.D. +1.1
mrs timecourse MRS Time24hr N.D. -1.1 N.D. N.D. +1.2
stress timecourse MRS + carbenicillin Time7hr N.D. -0.8 N.D. N.D. +1.3
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