Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS14375 and BBR_RS14380 are separated by 131 nucleotidesBBR_RS14380 and BBR_RS14390 are separated by 244 nucleotidesBBR_RS14390 and BBR_RS14395 are separated by 102 nucleotidesBBR_RS14395 and BBR_RS14400 are separated by 140 nucleotides BBR_RS14375: BBR_RS14375 - acetate kinase, at 999,106 to 1,000,335 _RS14375 BBR_RS14380: BBR_RS14380 - phosphate acetyltransferase, at 1,000,467 to 1,002,137 _RS14380 BBR_RS14390: BBR_RS14390 - tRNA-Gln, at 1,002,382 to 1,002,455 _RS14390 BBR_RS14395: BBR_RS14395 - ribose-phosphate diphosphokinase, at 1,002,558 to 1,003,580 _RS14395 BBR_RS14400: BBR_RS14400 - acetyltransferase, at 1,003,721 to 1,005,652 _RS14400
Group Condition BBR_RS14375 BBR_RS14380 BBR_RS14390 BBR_RS14395 BBR_RS14400
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day2 N.D. -4.4 N.D. N.D. -0.8
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 N.D. -3.5 N.D. N.D. -1.0
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2 N.D. -2.5 N.D. N.D. -1.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 N.D. -3.0 N.D. N.D. -1.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 N.D. -2.9 N.D. N.D. -0.9
carbon source reconstituted MRS with L-Fucose 30 mM N.D. -2.6 N.D. N.D. -1.0
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2 N.D. -2.9 N.D. N.D. -0.7
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day1 N.D. -2.5 N.D. N.D. -1.0
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse15; day1 N.D. -2.4 N.D. N.D. -1.0
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day1 N.D. -2.7 N.D. N.D. -0.8
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 N.D. -2.1 N.D. N.D. -1.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 N.D. -2.0 N.D. N.D. -1.2
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day1 N.D. -2.3 N.D. N.D. -0.9
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day3 N.D. -1.5 N.D. N.D. -1.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 N.D. -1.9 N.D. N.D. -1.1
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse15; day3 N.D. -1.5 N.D. N.D. -1.5
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse15; day2 N.D. -2.0 N.D. N.D. -0.8
mouse mouse 12; day 1; diet=HighFatHighSugar; sample=FecalPellet N.D. -1.4 N.D. N.D. -1.4
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day1 N.D. -2.0 N.D. N.D. -0.7
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day4 N.D. -1.5 N.D. N.D. -1.1
carbon source reconstituted MRS with Inulin 0.8 mM N.D. -2.4 N.D. N.D. -0.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day4 N.D. -1.6 N.D. N.D. -1.0
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. -1.9 N.D. N.D. -0.7
mouse mouse 11; day 1; diet=HighFatHighSugar; sample=FecalPellet N.D. -1.7 N.D. N.D. -0.8
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day1 N.D. -1.5 N.D. N.D. -0.9
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3 N.D. -1.6 N.D. N.D. -0.8
stress Recovery broth with Cefaclor 0.003 mM N.D. +0.7 N.D. N.D. +1.9
stress Recovery broth with Aztreonam 0.2 mM N.D. +0.7 N.D. N.D. +2.0
stress Recovery broth with Penicillin G 2e-04 mM N.D. +0.8 N.D. N.D. +1.9
stress Recovery broth with Ticarcillin 4e-04 mM N.D. +0.9 N.D. N.D. +1.9
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BBR_RS14375
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