Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS14285 and BBR_RS14290 are separated by 33 nucleotidesBBR_RS14290 and BBR_RS14295 are separated by 169 nucleotidesBBR_RS14295 and BBR_RS14300 are separated by 123 nucleotidesBBR_RS14300 and BBR_RS14305 are separated by 172 nucleotides BBR_RS14285: BBR_RS14285 - excinuclease ABC subunit UvrB, at 979,424 to 981,535 _RS14285 BBR_RS14290: BBR_RS14290 - TerC family protein, at 981,569 to 982,555 _RS14290 BBR_RS14295: BBR_RS14295 - pyruvate kinase, at 982,725 to 984,167 _RS14295 BBR_RS14300: BBR_RS14300 - NUDIX hydrolase, at 984,291 to 984,890 _RS14300 BBR_RS14305: BBR_RS14305 - tRNA-Leu, at 985,063 to 985,136 _RS14305
Group Condition BBR_RS14285 BBR_RS14290 BBR_RS14295 BBR_RS14300 BBR_RS14305
stress Recovery broth with Nitrofurazone 0.008 mM -4.7 -0.6 N.D. -0.3 N.D.
stress Recovery broth with Nitrofurazone 0.02 mM -4.7 -0.6 N.D. +0.1 N.D.
stress Recovery broth with Nitrofurantoin 0.03 mM -4.2 -0.6 N.D. -0.5 N.D.
stress Recovery broth with Metronidazole 0.03 mM -3.2 -1.9 N.D. +0.1 N.D.
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet -3.3 -1.3 N.D. +0.1 N.D.
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -1.8 -1.8 N.D. -0.5 N.D.
stress Recovery broth with Dimetridazole 0.1 mM -2.2 -0.8 N.D. -0.9 N.D.
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -2.1 -1.7 N.D. +0.1 N.D.
stress Recovery broth with Nitrofurazone 0.004 mM -3.4 -0.2 N.D. -0.1 N.D.
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet -3.3 +0.1 N.D. +0.2 N.D.
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet -2.6 +0.9 N.D. -0.7 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3 -0.2 +0.9 N.D. -2.6 N.D.
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine -1.7 +1.7 N.D. -1.3 N.D.
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet -2.1 +0.9 N.D. +0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 -2.0 -0.1 N.D. +1.1 N.D.
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum -1.8 +1.6 N.D. -0.8 N.D.
chicken chicken 10; day 5; diet=StandardDiet; sample=FecalPellet -1.7 +1.2 N.D. -0.3 N.D.
chicken chicken 10; day 4; diet=StandardDiet; sample=FecalPellet -1.3 +1.2 N.D. -0.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 -1.5 -0.7 N.D. +1.7 N.D.
chicken chicken 3; day 2; diet=StandardDiet; sample=FecalPellet -1.2 +1.4 N.D. -0.2 N.D.
chicken chicken 3; day 3; diet=StandardDiet; sample=FecalPellet -1.2 +1.4 N.D. -0.2 N.D.
nutrient dropout CDM1 without LipoicAcid -0.5 +1.5 N.D. -0.8 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 -0.8 -0.4 N.D. +1.5 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 -1.8 +0.7 N.D. +1.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 -1.2 -0.1 N.D. +1.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day5 -1.7 +0.6 N.D. +1.5 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 -1.1 +0.3 N.D. +1.4 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 -0.8 +1.5 N.D. +1.0 N.D.
nutrient dropout CDM1 without Phenylalanine -0.4 +2.3 N.D. +0.3 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day3 -0.0 +0.3 N.D. +2.8 N.D.
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