Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS14270 and BBR_RS14275 are separated by 249 nucleotidesBBR_RS14275 and BBR_RS14280 are separated by 147 nucleotidesBBR_RS14280 and BBR_RS14285 are separated by 165 nucleotidesBBR_RS14285 and BBR_RS14290 are separated by 33 nucleotides BBR_RS14270: BBR_RS14270 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase, at 975,881 to 976,759 _RS14270 BBR_RS14275: BBR_RS14275 - 30S ribosomal protein S1, at 977,009 to 978,484 _RS14275 BBR_RS14280: BBR_RS14280 - dephospho-CoA kinase, at 978,632 to 979,258 _RS14280 BBR_RS14285: BBR_RS14285 - excinuclease ABC subunit UvrB, at 979,424 to 981,535 _RS14285 BBR_RS14290: BBR_RS14290 - TerC family protein, at 981,569 to 982,555 _RS14290
Group Condition BBR_RS14270 BBR_RS14275 BBR_RS14280 BBR_RS14285 BBR_RS14290
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet N.D. -3.6 -2.5 -3.3 -1.3
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 N.D. -5.7 -4.5 -0.8 +0.7
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. -4.1 -1.7 -1.8 -1.8
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 N.D. -4.3 -2.8 -1.5 -0.7
stress Recovery broth with 3-Acetylpyridine 0.04 mM N.D. -5.3 -4.1 +0.2 +0.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 N.D. -4.5 -2.9 -0.8 -0.5
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. -3.6 -0.5 -2.1 -1.7
carbon source reconstituted MRS with Difucosyllactose 7.9 mM N.D. -4.3 -4.0 +0.5 +0.2
stress Recovery broth with Streptomycin 0.3 mM N.D. -4.6 -0.8 +0.1 -2.1
stress Recovery broth with Thioridazine 0.1 mM N.D. -4.4 -3.4 -0.5 +1.0
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 N.D. -5.7 -1.5 -1.1 +1.0
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day3 N.D. -5.7 -0.6 -1.2 +0.2
stress Recovery broth with Nitrofurazone 0.02 mM N.D. -0.7 -0.9 -4.7 -0.6
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day5 N.D. -4.1 -1.6 -0.8 -0.2
stress Recovery broth with Nitrofurazone 0.008 mM N.D. -0.3 -1.0 -4.7 -0.6
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day2 N.D. -5.8 -1.2 -0.2 +0.7
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 N.D. -4.9 -1.1 -0.4 +0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 N.D. -4.7 -0.5 -1.1 +0.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day2 N.D. -5.2 +0.1 -1.0 +0.4
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2 N.D. -5.0 -0.6 -0.5 +0.7
mouse mouse 11; day 1; diet=HighFatHighSugar; sample=FecalPellet N.D. -5.6 +0.1 -0.5 +1.0
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day1 N.D. -5.8 -0.3 -0.1 +1.2
nutrient dropout CDM1 without Uracil N.D. -4.0 -1.0 -0.8 +0.9
nutrient dropout CDM1 without Proline N.D. -1.2 -4.5 -0.3 +1.6
nutrient dropout CDM1 without Glycine N.D. -1.4 -4.0 -0.1 +1.2
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 N.D. -4.6 +0.7 -0.4 +1.5
nutrient dropout CDM1 without Phenylalanine N.D. -0.7 -3.8 -0.4 +2.3
nutrient dropout CDM1 without Phenylalanine N.D. -2.2 -2.5 -0.2 +2.3
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3 N.D. -4.1 +1.3 -0.2 +0.9
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet N.D. +2.3 -0.9 -2.6 +0.9
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