Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS14260 and BBR_RS14265 are separated by 157 nucleotidesBBR_RS14265 and BBR_RS14270 are separated by 104 nucleotidesBBR_RS14270 and BBR_RS14275 are separated by 249 nucleotidesBBR_RS14275 and BBR_RS14280 are separated by 147 nucleotides BBR_RS14260: BBR_RS14260 - ABC transporter ATP-binding protein, at 973,574 to 974,446 _RS14260 BBR_RS14265: BBR_RS14265 - Solute-binding protein of ABC transporter system for metals, at 974,604 to 975,776 _RS14265 BBR_RS14270: BBR_RS14270 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase, at 975,881 to 976,759 _RS14270 BBR_RS14275: BBR_RS14275 - 30S ribosomal protein S1, at 977,009 to 978,484 _RS14275 BBR_RS14280: BBR_RS14280 - dephospho-CoA kinase, at 978,632 to 979,258 _RS14280
Group Condition BBR_RS14260 BBR_RS14265 BBR_RS14270 BBR_RS14275 BBR_RS14280
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 -3.3 -2.3 N.D. -5.7 -4.5
stress Recovery broth with 3-Acetylpyridine 0.04 mM -3.6 -1.4 N.D. -5.3 -4.1
nutrient dropout CDM1 without Glycine -3.6 -3.6 N.D. -1.4 -4.0
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 -2.9 -2.1 N.D. -4.5 -2.9
nutrient dropout CDM1 without Uracil -3.7 -3.5 N.D. -4.0 -1.0
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day3 -3.3 -2.5 N.D. -5.7 -0.6
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 -3.3 -1.5 N.D. -5.7 -1.5
carbon source reconstituted MRS with Difucosyllactose 7.9 mM -3.3 -0.1 N.D. -4.3 -4.0
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day2 -3.3 -1.3 N.D. -5.8 -1.2
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 -3.0 -4.4 N.D. -1.7 -2.4
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 -3.1 -3.1 N.D. -4.7 -0.5
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 -3.3 -2.1 N.D. -4.9 -1.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 -2.7 -1.6 N.D. -4.3 -2.8
nutrient dropout CDM1 without Asparagine -3.8 -4.4 N.D. -2.4 -0.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day2 -3.6 -2.3 N.D. -5.2 +0.1
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day1 -3.3 -1.6 N.D. -5.8 -0.3
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet -1.9 -2.9 N.D. -3.6 -2.5
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 -3.2 -3.4 N.D. -2.8 -1.4
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day5 -2.5 -2.3 N.D. -4.1 -1.6
nutrient dropout CDM1 without Proline -1.5 -3.2 N.D. -1.2 -4.5
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day2 -3.5 -2.0 N.D. -5.1 +0.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day3 -3.2 -1.5 N.D. -4.8 -0.8
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3 -3.0 -1.9 N.D. -4.6 -0.7
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 -2.8 -2.3 N.D. -2.1 -3.0
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 -3.0 -3.2 N.D. -4.6 +0.7
nutrient dropout CDM1 without Adenine -3.5 -3.0 N.D. +0.5 -3.7
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 -3.0 -2.8 N.D. +0.5 -4.1
stress Recovery broth with Hygromycin B 0.2 mM -3.5 -1.6 N.D. -4.7 +0.4
nutrient dropout CDM1 without Glutathione -4.0 -3.8 N.D. +0.5 -2.0
nutrient dropout CDM1 without Glycine -4.0 -2.4 N.D. +1.3 -4.0
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