Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS14225 and BBR_RS14230 are separated by 57 nucleotidesBBR_RS14230 and BBR_RS14235 overlap by 1 nucleotidesBBR_RS14235 and BBR_RS14240 are separated by 30 nucleotidesBBR_RS14240 and BBR_RS14245 are separated by 177 nucleotides BBR_RS14225: BBR_RS14225 - ComF family protein, at 966,484 to 967,158 _RS14225 BBR_RS14230: BBR_RS14230 - HAMP domain-containing histidine kinase, at 967,216 to 968,289 _RS14230 BBR_RS14235: BBR_RS14235 - DNA-binding response regulator, at 968,289 to 969,011 _RS14235 BBR_RS14240: BBR_RS14240 - 1,4-alpha-glucan branching protein GlgB, at 969,042 to 971,294 _RS14240 BBR_RS14245: BBR_RS14245 - CarD family transcriptional regulator, at 971,472 to 972,065 _RS14245
Group Condition BBR_RS14225 BBR_RS14230 BBR_RS14235 BBR_RS14240 BBR_RS14245
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day4 +0.0 -5.1 N.D. -4.2 N.D.
mouse preculture cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -1.2 -5.7 N.D. -1.9 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 -0.6 -5.2 N.D. -2.7 N.D.
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet -0.5 -4.3 N.D. -3.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 +0.3 -4.8 N.D. -4.0 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day3 -0.1 -5.3 N.D. -2.9 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day1 -0.1 -5.6 N.D. -2.6 N.D.
mouse preculture cage3; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -0.7 -4.6 N.D. -2.9 N.D.
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet +0.3 -4.6 N.D. -3.8 N.D.
mouse coculture cage1; mouse2; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.2 -7.0 N.D. -1.0 N.D.
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs +0.4 -4.8 N.D. -3.7 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day4 -0.8 -4.4 N.D. -2.7 N.D.
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.3 -4.3 N.D. -3.9 N.D.
stress Recovery broth with Bacitracin 0.01 mM +0.1 -3.6 N.D. -4.3 N.D.
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +0.3 -5.9 N.D. -2.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day2 +0.0 -4.8 N.D. -3.0 N.D.
mouse coculture cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +0.0 -7.0 N.D. -0.7 N.D.
stress Recovery broth with Bacitracin 0.01 mM +0.1 -3.7 N.D. -4.2 N.D.
mouse coculture cage1; mouse3; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +0.1 -7.3 N.D. -0.5 N.D.
mouse coculture cage1; mouse1; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +0.2 -7.2 N.D. -0.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 +0.1 -4.7 N.D. -3.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 +0.3 -4.1 N.D. -3.8 N.D.
mouse preculture cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs +0.2 -5.4 N.D. -2.3 N.D.
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.6 -4.2 N.D. -3.8 N.D.
mouse coculture cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +0.2 -6.5 N.D. -1.1 N.D.
mouse coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +0.5 -6.5 N.D. -1.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day4 +0.4 -3.7 N.D. -3.7 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day2 +0.5 -5.3 N.D. -2.2 N.D.
mouse coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +0.5 -6.5 N.D. -0.9 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 +1.0 -5.2 N.D. -2.4 N.D.
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