Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS13905 and BBR_RS13910 overlap by 4 nucleotidesBBR_RS13910 and BBR_RS13915 are separated by 155 nucleotidesBBR_RS13915 and BBR_RS20805 are separated by 366 nucleotidesBBR_RS20805 and BBR_RS13925 are separated by 138 nucleotides BBR_RS13905: BBR_RS13905 - ornithine carbamoyltransferase, at 899,670 to 900,635 _RS13905 BBR_RS13910: BBR_RS13910 - arginine repressor, at 900,632 to 901,144 _RS13910 BBR_RS13915: BBR_RS13915 - argininosuccinate synthase, at 901,300 to 902,538 _RS13915 BBR_RS20805: BBR_RS20805 - hypothetical protein, at 902,905 to 903,759 _RS20805 BBR_RS13925: BBR_RS13925 - IS21 family transposase, at 903,898 to 905,379 _RS13925
Group Condition BBR_RS13905 BBR_RS13910 BBR_RS13915 BBR_RS20805 BBR_RS13925
nutrient dropout CDM1 without Arginine -6.1 -1.0 -4.9 -0.0 N.D.
nutrient dropout CDM1 without Arginine -4.2 -0.9 -5.6 +0.2 N.D.
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos -3.5 -4.1 -3.2 +0.3 N.D.
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos -3.6 -3.2 -3.0 -0.3 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day3 -5.5 -3.6 -0.3 -0.6 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day3 -4.2 -3.7 -0.6 -0.6 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day1 -4.7 -4.3 -0.1 +0.0 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 -4.5 -3.6 -0.2 -0.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 -5.0 -3.4 +0.0 -0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day2 -4.1 -4.0 -0.2 -0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 -4.4 -3.2 -0.2 -0.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 -3.9 -3.2 -0.2 -0.5 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day1 -2.5 -4.2 -0.3 -0.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 -4.0 -1.5 +0.0 -1.9 N.D.
mouse coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -1.9 -4.9 -0.2 -0.5 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day1 -2.7 -4.1 -0.3 -0.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 -4.4 -2.1 -0.1 -0.8 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 -3.0 -3.2 -0.2 -0.8 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 -2.5 -3.7 -0.1 -0.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 -3.6 -3.2 -0.2 +0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 -4.3 -1.6 -0.3 -0.6 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day4 -3.5 -2.9 -0.1 -0.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day4 -3.1 -2.7 -0.2 -0.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day4 -2.4 -2.9 -0.2 -1.0 N.D.
mouse coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -1.7 -4.2 -0.1 -0.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day3 -2.3 -2.8 -0.0 -1.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day2 -1.5 -3.5 -0.2 -1.1 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day2 -5.4 +0.6 +0.3 -0.3 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2 -5.6 +1.1 -0.1 -0.3 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 -5.3 +1.5 -0.5 -0.3 N.D.
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