Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS13895 and BBR_RS13900 overlap by 11 nucleotidesBBR_RS13900 and BBR_RS13905 are separated by 28 nucleotidesBBR_RS13905 and BBR_RS13910 overlap by 4 nucleotidesBBR_RS13910 and BBR_RS13915 are separated by 155 nucleotides BBR_RS13895: BBR_RS13895 - acetylglutamate kinase, at 897,400 to 898,356 _RS13895 BBR_RS13900: BBR_RS13900 - acetylornithine transaminase, at 898,346 to 899,641 _RS13900 BBR_RS13905: BBR_RS13905 - ornithine carbamoyltransferase, at 899,670 to 900,635 _RS13905 BBR_RS13910: BBR_RS13910 - arginine repressor, at 900,632 to 901,144 _RS13910 BBR_RS13915: BBR_RS13915 - argininosuccinate synthase, at 901,300 to 902,538 _RS13915
Group Condition BBR_RS13895 BBR_RS13900 BBR_RS13905 BBR_RS13910 BBR_RS13915
nutrient dropout CDM1 without Arginine -3.4 -4.3 -6.1 -1.0 -4.9
nutrient dropout CDM1 without Arginine -3.4 -4.9 -4.2 -0.9 -5.6
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos -1.8 -2.4 -3.5 -4.1 -3.2
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos -2.4 -2.2 -3.6 -3.2 -3.0
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 -1.9 -0.7 -3.9 -3.2 -0.2
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day3 +0.0 -0.3 -5.5 -3.6 -0.3
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 -0.7 -0.5 -4.5 -3.6 -0.2
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 -0.0 -0.3 -5.0 -3.4 +0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day2 +0.0 -0.3 -4.1 -4.0 -0.2
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day1 +0.4 +0.4 -4.7 -4.3 -0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 -0.4 -0.6 -3.6 -3.2 -0.2
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day3 +0.3 +0.2 -4.2 -3.7 -0.6
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet -1.1 -1.0 -3.1 -2.6 -0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 +0.0 -1.6 -2.5 -3.7 -0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 -0.0 +0.0 -4.4 -3.2 -0.2
mouse coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.5 -0.4 -1.9 -4.9 -0.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 -1.0 -1.1 -4.0 -1.5 +0.0
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day4 -1.4 -0.2 -3.1 -2.7 -0.2
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day4 +0.0 -0.8 -3.5 -2.9 -0.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 -0.3 -0.8 -4.3 -1.6 -0.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 -0.2 -0.6 -4.4 -2.1 -0.1
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day4 -1.3 +0.1 -2.2 -3.5 -0.0
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day1 +0.2 +0.4 -2.7 -4.1 -0.3
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day1 +0.8 +0.1 -2.5 -4.2 -0.3
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 -0.6 -0.4 -5.3 +1.5 -0.5
nutrient dropout CDM1 without Glycine -0.7 +1.5 -3.6 -1.5 +0.3
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2 +0.8 +0.5 -5.6 +1.1 -0.1
nutrient dropout control CDM1 +1.2 +1.4 -0.3 -3.8 +0.7
nutrient dropout CDM1 without Pyridoxamine +1.3 +1.8 -1.0 -3.5 +0.8
nutrient dropout CDM1 without Asparagine +1.5 +1.9 -0.6 -3.2 +1.0
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