Fitness for 5 genes in Bifidobacterium breve UCC2003

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BBR_RS13885	BBR_RS13890	BBR_RS13895	BBR_RS13900	BBR_RS13905
nutrient dropout	CDM1 without Arginine	-4.2	-4.3	-3.4	-4.3	-6.1
nutrient dropout	CDM1 without Arginine	-4.4	-4.5	-3.4	-4.9	-4.2
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	-3.0	-3.1	-2.4	-2.2	-3.6
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	-2.8	-2.8	-1.8	-2.4	-3.5
chicken	chicken 21; day 7; diet=StandardDiet; sample=Cecum	-0.9	-1.9	-1.3	-1.4	-2.7
chicken	chicken 5; day 7; diet=StandardDiet; sample=FecalPellet	-1.3	-1.6	-1.1	-1.0	-3.1
chicken	chicken 21; day 7; diet=StandardDiet; sample=Small_intestine	-1.5	-1.5	-1.0	-1.5	-2.5
mouse	diet=StandardDiet2; sample=FecalPellet; mouse16; day4	+0.1	-1.8	-0.6	-0.4	-5.3
mouse	diet=StandardDiet; sample=FecalPellet; mouse1; day4	-0.3	-1.1	-1.9	-0.7	-3.9
chicken coculture	chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-1.0	-1.6	-1.5	-1.3	-2.2
mouse	diet=StandardDiet2; sample=FecalPellet; mouse16; day3	-0.4	-1.3	-0.7	-0.5	-4.5
chicken	chicken 5; day 6; diet=StandardDiet; sample=FecalPellet	-1.2	-1.3	-1.0	-1.3	-2.4
mouse	diet=StandardDiet2; sample=FecalPellet; mouse18; day3	+0.1	-1.2	+0.0	-0.3	-5.5
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6	+0.3	-0.9	-1.0	-1.1	-4.0
mouse	diet=StandardDiet; sample=FecalPellet; mouse2; day3	-0.4	-0.9	-0.0	-0.3	-5.0
mouse	diet=StandardDiet2; sample=FecalPellet; mouse17; day2	-0.0	-0.8	+0.1	+0.2	-5.4
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3	-1.1	-2.7	-1.1	-1.0	+0.5
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5	+0.5	-0.9	-0.2	-0.6	-4.4
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2	+0.1	-0.5	+0.8	+0.5	-5.6
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse12; day1	+0.3	-0.6	+0.4	+0.4	-4.7
stress	Recovery broth with Trimethoprim 0.01 mM	-1.0	-0.9	-1.2	-1.0	+2.6
nutrient dropout	CDM1 without Glycine	+1.1	+0.4	-0.7	+1.5	-3.6
nutrient dropout	CDM1 without Cytosine	+1.0	+1.7	+1.1	+1.6	-1.0
nutrient dropout	CDM1 without Pyridoxamine	+1.0	+1.5	+1.3	+1.8	-1.0
nutrient dropout	CDM1 without Isoleucine	+1.3	+1.6	+1.3	+1.8	-1.0
nutrient dropout	CDM1 without Cyanocobalamin	+1.4	+1.6	+1.2	+1.7	-0.5
nutrient dropout	CDM1 without Asparagine	+1.2	+1.7	+1.5	+1.9	-0.6
nutrient dropout	CDM1 without Adenine	+1.7	+2.1	+1.2	+2.2	-0.9
nutrient dropout	CDM1 without Uracil	+1.3	+1.6	+1.4	+1.9	+0.6
nutrient dropout	CDM1 without Adenine	+2.0	+2.2	+1.9	+2.1	-0.7