Fitness for 5 genes in Bifidobacterium breve UCC2003

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BBR_RS13640	BBR_RS13645	BBR_RS13650	BBR_RS13655	BBR_RS13660
mouse preculture	cage3; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	-4.3	N.D.	+0.4	+0.5	+0.2
mouse	diet=StandardDiet2; sample=FecalPellet; mouse17; day1	-2.9	N.D.	-0.2	+0.1	-0.2
mouse	diet=StandardDiet; sample=FecalPellet; mouse4; day2	-2.9	N.D.	+0.1	+0.1	-0.4
mouse preculture	cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	-2.6	N.D.	+0.1	-0.1	-0.4
chicken	chicken 3; day 2; diet=StandardDiet; sample=FecalPellet	-3.1	N.D.	-0.1	-0.0	+0.2
mouse	diet=StandardDiet; sample=FecalPellet; mouse4; day1	-3.0	N.D.	+0.2	-0.0	-0.0
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse13; day1	-2.9	N.D.	+0.0	+0.1	-0.0
mouse	diet=StandardDiet2; sample=FecalPellet; mouse17; day2	-2.2	N.D.	-0.5	+0.0	-0.0
mouse	diet=StandardDiet; sample=FecalPellet; mouse5; day1	-2.4	N.D.	-0.3	-0.1	+0.2
carbon source	reconstituted MRS with Difucosyllactose 7.9 mM	-2.2	N.D.	-0.1	-0.2	-0.1
mouse	diet=StandardDiet; sample=FecalPellet; mouse3; day2	-2.3	N.D.	-0.2	-0.1	-0.1
mouse	diet=StandardDiet2; sample=FecalPellet; mouse17; day4	-2.8	N.D.	+0.1	+0.2	-0.0
mouse preculture	cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	-2.1	N.D.	+0.4	-0.5	-0.2
mrs timecourse	MRS Time48hr	-1.4	N.D.	-0.4	-1.0	+0.5
mouse preculture	cage3; mouse1; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	-2.7	N.D.	+0.4	+0.1	+0.0
mouse	diet=StandardDiet; sample=FecalPellet; mouse4; day3	-2.2	N.D.	-0.2	+0.2	+0.1
mouse coculture	cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-2.2	N.D.	-0.2	+0.3	+0.1
mouse	diet=StandardDiet; sample=FecalPellet; mouse1; day1	-2.2	N.D.	+0.4	+0.1	-0.2
mouse	diet=StandardDiet; sample=FecalPellet; mouse2; day2	-2.3	N.D.	+0.1	+0.3	+0.2
mouse coculture	cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-2.2	N.D.	+0.2	+0.4	-0.0
mouse	diet=StandardDiet; sample=FecalPellet; mouse1; day3	-2.1	N.D.	+0.6	-0.1	-0.1
mouse coculture	cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-2.1	N.D.	+0.2	+0.3	-0.0
mouse preculture	cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	-2.1	N.D.	-0.3	+0.5	+0.2
mouse preculture	cage3; mouse3; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	-2.3	N.D.	+0.2	+0.8	+0.1
nutrient dropout	CDM1 without Valine	+1.6	N.D.	-0.0	-0.9	-0.1
nutrient dropout	CDM1 without Adenine	+1.7	N.D.	-0.1	-0.9	-0.0
nutrient dropout	CDM1 without Serine	+1.4	N.D.	+0.5	-0.7	-0.0
chicken coculture	chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	+1.8	N.D.	+0.3	-0.6	+0.1
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	+1.9	N.D.	+0.4	-0.4	+0.0
chicken	chicken 2; day 6; diet=StandardDiet; sample=FecalPellet	+1.8	N.D.	+0.7	-0.1	-0.0