Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS13635 and BBR_RS13640 overlap by 1 nucleotidesBBR_RS13640 and BBR_RS13645 are separated by 36 nucleotidesBBR_RS13645 and BBR_RS13650 are separated by 33 nucleotidesBBR_RS13650 and BBR_RS13655 are separated by 124 nucleotides BBR_RS13635: BBR_RS13635 - carbamoyl-phosphate synthase large subunit, at 831,142 to 834,525 _RS13635 BBR_RS13640: BBR_RS13640 - orotidine-5'-phosphate decarboxylase, at 834,525 to 835,445 _RS13640 BBR_RS13645: BBR_RS13645 - guanylate kinase, at 835,482 to 836,072 _RS13645 BBR_RS13650: BBR_RS13650 - 3'-5' exonuclease, at 836,106 to 836,813 _RS13650 BBR_RS13655: BBR_RS13655 - hypothetical protein, at 836,938 to 837,369 _RS13655
Group Condition BBR_RS13635 BBR_RS13640 BBR_RS13645 BBR_RS13650 BBR_RS13655
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day1 -4.4 -2.9 N.D. -0.2 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day1 -4.3 -2.4 N.D. -0.3 -0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day1 -4.2 -3.0 N.D. +0.2 -0.0
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day2 -4.3 -2.2 N.D. -0.5 +0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day2 -4.2 -2.3 N.D. -0.2 -0.1
mouse coculture cage1; mouse1; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -4.3 -2.3 N.D. +0.1 -0.0
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day1 -4.4 -1.9 N.D. +0.1 -0.2
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day2 -4.4 -2.2 N.D. +0.1 +0.2
chicken chicken 3; day 2; diet=StandardDiet; sample=FecalPellet -3.1 -3.1 N.D. -0.1 -0.0
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2 -4.1 -2.0 N.D. -0.0 -0.1
mouse preculture cage3; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -2.8 -4.3 N.D. +0.4 +0.5
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day2 -3.4 -2.9 N.D. +0.1 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 -3.9 -2.2 N.D. -0.2 +0.2
mouse coculture cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -3.9 -2.2 N.D. -0.2 +0.3
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day1 -4.2 -0.8 N.D. -0.8 -0.2
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day2 -4.1 -2.3 N.D. +0.1 +0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day1 -4.5 -1.4 N.D. -0.2 +0.1
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day1 -3.0 -2.9 N.D. +0.0 +0.1
mouse coculture cage1; mouse3; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -4.4 -1.3 N.D. +0.3 -0.1
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day1 -4.2 -1.6 N.D. -0.1 +0.3
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day4 -3.1 -2.8 N.D. +0.1 +0.2
mouse preculture cage3; mouse1; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -4.0 -1.8 N.D. +0.4 +0.0
mouse coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -3.6 -2.2 N.D. +0.2 +0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 -3.6 -2.1 N.D. +0.6 -0.1
mouse preculture cage3; mouse1; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -2.9 -2.7 N.D. +0.4 +0.1
mouse coculture cage1; mouse2; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -4.1 -1.4 N.D. +0.2 +0.3
nutrient dropout CDM1 without Glycine +4.2 +1.2 N.D. -0.0 -0.9
nutrient dropout CDM1 without Adenine +4.2 +1.6 N.D. -0.3 -0.6
nutrient dropout CDM1 without Phenylalanine +6.5 +0.9 N.D. -0.4 -0.5
nutrient dropout CDM1 without Phenylalanine +7.2 +1.5 N.D. -0.1 -0.2
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