Fitness for 5 genes in Bifidobacterium breve UCC2003

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BBR_RS13590	BBR_RS13595	BBR_RS13600	BBR_RS13605	BBR_RS13610
nutrient dropout control	CDM1	-0.7	-0.7	-0.6	-0.7	+0.0
nutrient dropout	CDM1 without Adenine	-0.4	-0.5	-0.6	-0.9	-0.2
nutrient dropout	CDM1 without LipoicAcid	-0.4	-0.7	-0.6	-0.7	-0.1
nutrient dropout	CDM1 without Cytosine	-0.3	-0.6	-0.5	-1.0	+0.1
nutrient dropout	CDM1 without Asparagine	-0.7	-0.4	-0.2	-0.7	-0.2
nutrient dropout	CDM1 without Proline	-0.4	-0.6	-0.5	-0.7	-0.2
nutrient dropout	CDM1 without Glutathione	-0.4	-0.4	-0.6	-0.7	-0.1
nutrient dropout	CDM1 without Pyridoxamine	-0.4	-0.6	-0.6	-0.7	+0.2
nutrient dropout	CDM1 without Phenylalanine	-0.5	-0.1	-0.7	-0.9	+0.1
nutrient dropout	CDM1 without FolicAcid	-0.6	-0.3	-0.6	-0.7	+0.2
nutrient dropout	CDM1 without Thiamine	-0.5	-0.5	-0.5	-0.6	+0.2
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	-0.5	-0.6	-0.6	-0.4	+0.2
nutrient dropout control	CDM1	-0.5	-0.4	-0.5	-0.8	+0.2
nutrient dropout	CDM1 without Pantothenate	-0.4	-0.5	-0.6	-0.6	+0.1
nutrient dropout	CDM1 without Cysteine	-0.2	-0.2	-0.9	-0.7	+0.4
nutrient dropout	CDM1 without Histidine	+0.1	-0.5	-0.6	-0.7	+0.2
nutrient dropout	CDM1 without Uracil	+0.2	-0.6	-0.6	-0.7	+0.2
nutrient dropout	CDM1 without Nicotinate	+0.3	-0.5	-0.7	-0.6	+0.0
nutrient dropout	CDM1 without Arginine	+0.5	-0.6	-0.6	-0.7	+0.0
nutrient dropout	CDM1 without Adenine	+0.4	-0.4	-0.7	-0.8	+0.2
nutrient dropout	CDM1 without Isoleucine	+0.4	-0.6	-0.4	-0.8	+0.1
stress	Recovery broth with Thioridazine 0.1 mM	-1.5	+0.4	-0.0	+0.2	+0.2
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3	+0.3	-0.2	-1.2	+0.3	+0.4
mrs timecourse	MRS Time48hr	+0.4	-0.3	+0.8	-0.5	+0.4
chicken	chicken 5; day 6; diet=StandardDiet; sample=FecalPellet	+0.2	+0.5	-0.8	+0.5	+0.5
supernatant	CDM1Gut with 50% spent media from Escherichia fergusonnii TT2	+1.0	+0.3	-0.5	+0.1	+0.7
chicken coculture	chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	+0.9	+0.6	-0.5	+0.5	+0.2
stress	Recovery broth with lactate 200 mM	-0.0	+0.7	+0.5	+0.8	+0.0
mouse preculture	cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	+0.7	+0.5	+0.6	+0.4	+0.1
chicken	chicken 2; day 6; diet=StandardDiet; sample=FecalPellet	+0.3	+0.2	+0.6	+0.6	+0.7