Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS13485 and BBR_RS13490 are separated by 5 nucleotidesBBR_RS13490 and BBR_RS13495 are separated by 33 nucleotidesBBR_RS13495 and BBR_RS13500 are separated by 173 nucleotidesBBR_RS13500 and BBR_RS13505 are separated by 207 nucleotides BBR_RS13485: BBR_RS13485 - 30S ribosomal protein S12, at 799,135 to 799,506 _RS13485 BBR_RS13490: BBR_RS13490 - 30S ribosomal protein S7, at 799,512 to 799,982 _RS13490 BBR_RS13495: BBR_RS13495 - elongation factor G, at 800,016 to 802,139 _RS13495 BBR_RS13500: BBR_RS13500 - elongation factor Tu, at 802,313 to 803,512 _RS13500 BBR_RS13505: BBR_RS13505 - DUF4391 domain-containing protein, at 803,720 to 804,451 _RS13505
Group Condition BBR_RS13485 BBR_RS13490 BBR_RS13495 BBR_RS13500 BBR_RS13505
nutrient dropout CDM1 without Glycine N.D. -4.9 N.D. N.D. -1.4
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day1 N.D. -5.4 N.D. N.D. -0.1
mouse preculture cage3; mouse1; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. -5.4 N.D. N.D. -0.0
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2 N.D. -5.3 N.D. N.D. -0.1
nutrient dropout CDM1 without Tyrosine N.D. -4.8 N.D. N.D. -0.6
nutrient dropout CDM1 without Thiamine N.D. -4.5 N.D. N.D. -0.8
carbon source reconstituted MRS with Maltodextrin 0.5 %w/v N.D. -5.3 N.D. N.D. +0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day1 N.D. -5.3 N.D. N.D. +0.2
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day1 N.D. -5.3 N.D. N.D. +0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day3 N.D. -5.2 N.D. N.D. +0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day2 N.D. -5.4 N.D. N.D. +0.5
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 N.D. -5.2 N.D. N.D. +0.5
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 N.D. -5.3 N.D. N.D. +0.6
carbon source reconstituted MRS with Vitagos-prebiotic 0.5 %w/v N.D. -5.2 N.D. N.D. +0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day2 N.D. -5.3 N.D. N.D. +0.6
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 N.D. -5.2 N.D. N.D. +0.7
mouse coculture cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -5.0 N.D. N.D. +0.6
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 N.D. -4.9 N.D. N.D. +0.5
stress Recovery broth with 3-Acetylpyridine 0.08 mM N.D. -4.9 N.D. N.D. +0.5
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day4 N.D. -5.3 N.D. N.D. +1.0
mouse coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -5.1 N.D. N.D. +0.9
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 N.D. -5.0 N.D. N.D. +0.9
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 N.D. -4.9 N.D. N.D. +0.7
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -4.8 N.D. N.D. +0.7
carbon source reconstituted MRS with Difucosyllactose 7.9 mM N.D. -4.6 N.D. N.D. +0.7
mouse preculture cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. -4.6 N.D. N.D. +0.8
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day4 N.D. -4.7 N.D. N.D. +0.9
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day4 N.D. -4.3 N.D. N.D. +1.0
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2 N.D. -4.3 N.D. N.D. +1.2
stress timecourse MRS + kanamycin Time24hr N.D. +4.6 N.D. N.D. -0.8
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