Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS13425 and BBR_RS13430 are separated by 83 nucleotidesBBR_RS13430 and BBR_RS13435 overlap by 4 nucleotidesBBR_RS13435 and BBR_RS13440 overlap by 28 nucleotidesBBR_RS13440 and BBR_RS13445 are separated by 137 nucleotides BBR_RS13425: BBR_RS13425 - hypothetical protein, at 782,393 to 783,205 _RS13425 BBR_RS13430: BBR_RS13430 - hypothetical protein, at 783,289 to 783,948 _RS13430 BBR_RS13435: BBR_RS13435 - hypothetical protein, at 783,945 to 785,315 _RS13435 BBR_RS13440: BBR_RS13440 - alpha/beta hydrolase, at 785,288 to 786,625 _RS13440 BBR_RS13445: BBR_RS13445 - phosphoribosylformylglycinamidine synthase, at 786,763 to 790,497 _RS13445
Group Condition BBR_RS13425 BBR_RS13430 BBR_RS13435 BBR_RS13440 BBR_RS13445
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet +0.8 -2.9 -3.0 -1.2 -3.4
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet +0.2 -1.5 -1.3 -1.3 -4.6
mouse coculture cage1; mouse1; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.3 +0.2 +0.1 +0.1 -7.5
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 -0.2 -0.4 -0.4 -0.0 -6.1
mouse coculture cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.1 -0.1 +0.2 -0.0 -7.1
mouse coculture cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +0.1 +0.1 +0.1 +0.0 -7.3
mouse coculture cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.0 +0.1 +0.3 +0.2 -7.4
mouse coculture cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.2 +0.1 +0.1 +0.1 -6.9
mouse coculture cage1; mouse2; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.4 -0.2 -0.0 +0.1 -6.2
nutrient dropout CDM1 without Adenine -1.5 -0.6 -0.2 +0.1 -4.6
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day2 -0.5 -0.1 +0.3 +0.1 -6.5
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day4 -0.5 -0.2 +0.2 -0.1 -6.0
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 -0.9 +0.0 -0.1 -0.0 -5.7
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day2 -0.1 +0.4 -0.2 -0.3 -6.3
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day1 -0.2 +0.0 -0.2 +0.2 -6.3
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day1 -0.3 +0.0 +0.0 +0.1 -6.3
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day2 -0.6 -0.1 +0.2 -0.0 -5.8
mouse coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.0 +0.3 +0.3 +0.0 -6.9
mouse coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +0.1 +0.4 +0.3 +0.0 -6.9
mouse coculture cage1; mouse3; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +0.1 +0.0 +0.4 +0.1 -6.7
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 -0.1 -0.6 +0.4 +0.2 -5.9
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day1 -0.4 +0.3 -0.1 +0.1 -5.9
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day2 +0.4 +0.1 -0.1 -0.1 -6.4
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.3 +0.3 +0.1 +0.1 -6.2
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 +0.0 +0.4 -0.1 -0.0 -6.1
mouse mouse 4; day 1; diet=StandardDiet; sample=FecalPellet -0.3 +0.3 +0.3 -0.2 -5.5
mouse coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +0.2 +0.3 +0.3 +0.1 -6.1
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 -0.2 +0.5 -0.1 +0.2 -5.7
chicken chicken 3; day 2; diet=StandardDiet; sample=FecalPellet -0.3 +0.5 +0.4 +0.1 -5.5
stress Recovery broth with acetate 350 mM -0.1 +3.2 +3.0 +0.5 +1.3
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