Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS13295 and BBR_RS13300 overlap by 17 nucleotidesBBR_RS13300 and BBR_RS13305 are separated by 8 nucleotidesBBR_RS13305 and BBR_RS13310 are separated by 46 nucleotidesBBR_RS13310 and BBR_RS13315 overlap by 4 nucleotides BBR_RS13295: BBR_RS13295 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 758,610 to 759,110 _RS13295 BBR_RS13300: BBR_RS13300 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 759,094 to 760,272 _RS13300 BBR_RS13305: BBR_RS13305 - transcriptional repressor, at 760,281 to 760,709 _RS13305 BBR_RS13310: BBR_RS13310 - hypothetical protein, at 760,756 to 761,466 _RS13310 BBR_RS13315: BBR_RS13315 - hypothetical protein, at 761,463 to 761,882 _RS13315
Group Condition BBR_RS13295 BBR_RS13300 BBR_RS13305 BBR_RS13310 BBR_RS13315
mouse coculture cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -4.7 -5.3 -0.1 +0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day2 N.D. -3.8 -6.3 +0.2 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 N.D. -3.4 -5.8 -0.1 -0.5
mouse coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -4.5 -4.9 -0.2 +0.2
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day1 N.D. -4.3 -4.8 +0.3 -0.2
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -3.8 -4.9 -0.0 -0.1
mouse coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -4.5 -4.4 -0.0 +0.0
mouse preculture cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. -3.8 -5.0 -0.1 +0.4
mouse coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -3.8 -4.5 +0.1 -0.2
chicken chicken 10; day 4; diet=StandardDiet; sample=FecalPellet N.D. -3.2 -4.7 +0.1 -0.5
mouse preculture cage3; mouse1; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. -4.6 -3.6 -0.3 +0.2
mouse coculture cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -4.5 -3.5 +0.1 -0.1
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day4 N.D. -3.0 -4.5 -0.3 +0.2
mouse coculture cage1; mouse1; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -4.4 -3.3 +0.2 +0.0
chicken chicken 10; day 5; diet=StandardDiet; sample=FecalPellet N.D. -3.0 -3.9 +0.0 -0.6
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 N.D. -3.2 -3.9 -0.6 +0.2
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day1 N.D. -2.8 -4.4 +0.2 -0.4
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet N.D. -2.9 -4.4 +0.1 -0.3
mouse preculture cage3; mouse1; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. -4.2 -2.9 +0.1 -0.2
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. -2.1 -4.7 +0.3 -0.5
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day3 N.D. -3.8 -3.3 -0.0 +0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 N.D. -3.3 -4.0 +0.5 -0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 N.D. -3.9 -3.7 +0.3 +0.3
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day1 N.D. -4.3 -2.5 +0.1 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 N.D. -3.8 -2.7 +0.4 -0.2
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet N.D. -2.6 -4.1 +0.2 +0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day1 N.D. -4.3 -2.3 +0.4 +0.1
chicken chicken 1; day 2; diet=StandardDiet; sample=FecalPellet N.D. -3.5 -3.0 +0.5 +0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day3 N.D. -3.9 -2.5 +0.5 +0.2
stress Recovery broth with Levofloxacin 0.2 mM N.D. -2.6 -3.6 +0.5 +0.5
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