Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS13160 and BBR_RS13165 are separated by 56 nucleotidesBBR_RS13165 and BBR_RS13170 are separated by 191 nucleotidesBBR_RS13170 and BBR_RS13175 are separated by 39 nucleotidesBBR_RS13175 and BBR_RS13180 are separated by 183 nucleotides BBR_RS13160: BBR_RS13160 - serine O-acetyltransferase, at 728,535 to 729,077 _RS13160 BBR_RS13165: BBR_RS13165 - amino acid permease, at 729,134 to 730,591 _RS13165 BBR_RS13170: BBR_RS13170 - alanine racemase, at 730,783 to 732,141 _RS13170 BBR_RS13175: BBR_RS13175 - deoxyguanosinetriphosphate triphosphohydrolase, at 732,181 to 733,467 _RS13175 BBR_RS13180: BBR_RS13180 - DNA primase, at 733,651 to 735,753 _RS13180
Group Condition BBR_RS13160 BBR_RS13165 BBR_RS13170 BBR_RS13175 BBR_RS13180
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet +0.3 -0.9 N.D. -2.9 N.D.
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet +0.2 -0.4 N.D. -2.9 N.D.
carbon source reconstituted MRS with Difucosyllactose 7.9 mM -1.2 +0.3 N.D. -2.1 N.D.
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum -0.1 -0.4 N.D. -2.1 N.D.
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -1.2 -0.6 N.D. -0.6 N.D.
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine -0.2 -0.5 N.D. -1.1 N.D.
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -0.9 +0.0 N.D. -0.8 N.D.
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -1.3 +0.2 N.D. +0.3 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 +0.5 -0.6 N.D. -0.7 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day5 +0.3 +0.6 N.D. -1.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day5 +0.4 +0.7 N.D. -1.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day3 +0.5 +0.4 N.D. -0.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day5 +0.6 +0.6 N.D. -0.7 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 +0.5 +0.6 N.D. -0.7 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 +0.6 +0.5 N.D. -0.5 N.D.
nutrient dropout CDM1 without Phenylalanine +1.1 -0.1 N.D. -0.5 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day4 +0.5 +0.6 N.D. -0.5 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day3 +0.6 +0.7 N.D. -0.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 +0.8 +0.8 N.D. -1.0 N.D.
nutrient dropout CDM1 without Glycine +1.2 -0.5 N.D. +0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 +0.6 +0.6 N.D. -0.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 +0.6 +0.7 N.D. -0.5 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 +0.9 +0.3 N.D. -0.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 +0.6 +1.0 N.D. -0.7 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 +0.7 +0.7 N.D. -0.5 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day4 +0.7 +0.8 N.D. -0.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day6 +1.0 +0.6 N.D. -0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day5 +0.8 +0.7 N.D. +0.0 N.D.
nutrient dropout CDM1 without Adenine +1.0 +0.2 N.D. +0.3 N.D.
nutrient dropout CDM1 without Methionine +0.4 +0.4 N.D. +0.8 N.D.
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