Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS13130 and BBR_RS13135 overlap by 8 nucleotidesBBR_RS13135 and BBR_RS13140 are separated by 392 nucleotidesBBR_RS13140 and BBR_RS13145 are separated by 189 nucleotidesBBR_RS13145 and BBR_RS13150 are separated by 305 nucleotides BBR_RS13130: BBR_RS13130 - ABC transporter ATP-binding protein, at 721,220 to 722,011 _RS13130 BBR_RS13135: BBR_RS13135 - ABC transporter ATP-binding protein, at 722,004 to 722,789 _RS13135 BBR_RS13140: BBR_RS13140 - cysteine synthase, at 723,182 to 724,204 _RS13140 BBR_RS13145: BBR_RS13145 - cystathionine gamma-synthase, at 724,394 to 725,578 _RS13145 BBR_RS13150: BBR_RS13150 - DNA helicase RecQ, at 725,884 to 727,803 _RS13150
Group Condition BBR_RS13130 BBR_RS13135 BBR_RS13140 BBR_RS13145 BBR_RS13150
nutrient dropout CDM1 without Cysteine N.D. N.D. -2.0 -1.8 +0.2
nutrient dropout CDM1 without Cysteine N.D. N.D. -1.6 -1.4 +0.4
stress timecourse MRS + kanamycin Time24hr N.D. N.D. -1.2 -1.2 -0.1
stress timecourse MRS + carbenicillin Time24hr N.D. N.D. -1.3 -1.0 -0.2
stress timecourse MRS + kanamycin Time48hr N.D. N.D. -1.2 -0.9 -0.1
stress timecourse MRS + carbenicillin Time9hr N.D. N.D. -1.1 -0.7 -0.2
stress timecourse MRS + carbenicillin Time9hr N.D. N.D. -0.9 -0.8 -0.1
stress timecourse MRS + carbenicillin Time8hr N.D. N.D. -0.8 -0.7 -0.2
stress timecourse MRS + kanamycin Time9hr N.D. N.D. -0.7 -0.7 -0.1
stress timecourse MRS + kanamycin Time8hr N.D. N.D. -0.8 -0.7 -0.0
stress timecourse MRS + kanamycin Time48hr N.D. N.D. -1.1 -0.7 +0.4
stress timecourse MRS + carbenicillin Time48hr N.D. N.D. -1.1 -0.3 -0.0
stress timecourse MRS + carbenicillin Time8hr N.D. N.D. -0.7 -0.5 -0.1
stress timecourse MRS + carbenicillin Time48hr N.D. N.D. -0.7 -0.5 +0.1
mrs timecourse MRS Time24hr N.D. N.D. -0.5 -0.7 +0.2
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse15; day3 N.D. N.D. -0.8 -0.6 +0.4
stress Recovery broth with Thioridazine 0.1 mM N.D. N.D. -0.5 -0.6 +0.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day4 N.D. N.D. -0.6 +0.4 +0.3
nutrient dropout CDM1 without Glycine N.D. N.D. -0.6 +0.4 +0.5
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. N.D. +0.4 +0.6 -0.7
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 N.D. N.D. -0.5 +0.3 +0.6
stress Recovery broth with Benzethonium chloride 0.1 mM N.D. N.D. -0.4 +0.6 +0.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 N.D. N.D. -0.3 +0.5 +0.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day4 N.D. N.D. -0.4 +0.5 +0.7
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 N.D. N.D. -0.3 +0.3 +0.9
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 N.D. N.D. +0.3 +0.7 +0.3
nutrient dropout CDM1 without Methionine N.D. N.D. +0.3 +0.1 +1.0
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day3 N.D. N.D. +0.2 +0.9 +0.7
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos N.D. N.D. +1.6 +0.3 -0.0
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos N.D. N.D. +1.3 +0.6 +0.0
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